PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G000103_P01 | ||||||||
Common Name | LOC103652541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 197aa MW: 21241.9 Da PI: 8.7864 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0013 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L rH +H GRMZM2G000103_P01 60 HQCSLCHRTFPSGQALGRHKTSH 82 79*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 1.5E-4 | 10 | 121 | No hit | No description |
SuperFamily | SSF57667 | 1.3E-5 | 56 | 84 | No hit | No description |
Pfam | PF13912 | 4.0E-11 | 60 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.203 | 60 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-6 | 110 | 126 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MALSKSLVNK AGQHHRHGYK CSVCDKVMTS HWKLSSPLAA TPRDKVLSGG TAHAKEEKLH 60 QCSLCHRTFP SGQALGRHKT SHWKPPSAVP RDEDEASFGD TAHTKEEKLH QCSLCHRTFP 120 SGQALGAWAG TSGCTTRRTR TRTPPGTKEA SVAAVATAVV RDFDLNLSAE ADGVPPDAKR 180 ACTDDSAAMM AVLRDFD |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G000103 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G000103_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020404737.1 | 2e-43 | zinc finger protein 36 | ||||
TrEMBL | A0A1D6NFW2 | 1e-142 | A0A1D6NFW2_MAIZE; Zinc finger protein AZF1 | ||||
STRING | GRMZM2G000103_P01 | 1e-143 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10028 | 23 | 35 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19580.2 | 7e-14 | zinc-finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G000103_P01 |
Entrez Gene | 103652541 |