PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EF517601.1_FGP010
Common NameLOC100382800, rf1-C1-g2
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GeBP
Protein Properties Length: 399aa    MW: 42173.1 Da    PI: 4.712
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EF517601.1_FGP010genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57398.37e-3187186297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkif 89 
                        lfqrlw++e e+++L+G++df+a++g+   +++ d+  fye +++++sf+++ksql+eK+rrLKkK++ + ++ a++g+ ++f++ h+  i+
  EF517601.1_FGP010  87 LFQRLWTDEEELLILRGFLDFTARRGTtfASHQyDTGPFYEEIRRRLSFEFTKSQLIEKLRRLKKKYRVCAARvAAQGDAFAFRSVHEGAIY 178
                        79************************99877778*************************************998899*************** PP

             DUF573  90 elskkiWg 97 
                        ++++ iW+
  EF517601.1_FGP010 179 DVARHIWR 186
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.4E-2788185IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MADHDPRAAA ASSSAGGDED DEGTDTDVSD SNLGNPQGQD PLPFPDAAWV PPHPLAPAHE  60
PAGALPPPLP QGPSAGASAT TDDSRRLFQR LWTDEEELLI LRGFLDFTAR RGTTFASHQY  120
DTGPFYEEIR RRLSFEFTKS QLIEKLRRLK KKYRVCAARV AAQGDAFAFR SVHEGAIYDV  180
ARHIWRPAFR RGEGGGAADA SDEDDINPVA AAAMEDGGGG SASTPVPTAR GRGGRCVRRR  240
TAQELEAPAL PATSALLLSD AAEDRHVVAV ENLAPPPPLQ VPTVSLTGAT PSPMPVCTGG  300
AAEEAIKSIM SPLLKEFINS VAVGGQSGFG LGLGTGFGGI GGFDILGLGT GVPGPNPGMP  360
SDDKWRQQQI LELEVYLKRI ELVREQVTAA LEDLRSSEG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasEF517601.1_FG010
Cis-element ? help Back to Top
SourceLink
PlantRegMapEF517601.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0654060.0BT065406.1 Zea mays full-length cDNA clone ZM_BFb0145O21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168973.10.0uncharacterized LOC100382800
TrEMBLC0PAT70.0C0PAT7_MAIZE; Putative transcription factor
TrEMBLK0DCL60.0K0DCL6_MAIZE; GBP21 GeBP type transcription factor (Fragment)
STRINGEF517601.1_FGP0100.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-33DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Kronmiller BA,Wise RP
    Computational finishing of large sequence contigs reveals interspersed nested repeats and gene islands in the rf1-associated region of maize.
    Plant Physiol., 2009. 151(2): p. 483-95
    [PMID:19675151]