PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC234522.1_FGP009
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 498aa    MW: 55228.6 Da    PI: 6.047
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC234522.1_FGP009genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00037192223
                       EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                       kC++C++ F +  n++rH r+H
  AC234522.1_FGP009 71 KCTKCSREFYSAINFRRHTRVH 92
                       7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.8477092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MNASRKSSHL SSKDSAETAR DIITTSGQIQ PLKIPDAIAA LAQAAAKANG ETEKYLPGWS  60
LFSPPKVQLN KCTKCSREFY SAINFRRHTR VHRVVIEGVT GSSILTALSS WMCKPGYASL  120
PVAYARAGSE LLDLIQAKPS MHLPVSSDEL FSLLDEASEK TFLCTNIVAC IQKFLFDGEV  180
EKNATELKNV VSCASYMLEQ KLLEAWCADK TAEALRCQKL LEDEEEAAQK RQAELMKRKR  240
MKKLRQKEQR LKNLKDEDVS VQSPDIMDDA TCSTAIQSVN SIYDPDCFEQ EESQYLQFPA  300
LITLETNNDF NVDLPVEDIS CDLGPKMDKG VVLRQQVVSR HHLGRTEKLA ESSILYGSVV  360
TSKHVASARP SNYKDPNVCS APSRNKTCEL KLWSEIEEQC QKHELDVDEC GMGPSKNSRV  420
LIGSIIVAIE DGSEHLLDLG SKNDPVPPSS KTKKHASVKV VQQVTSEGNR NEGVPDSDNR  480
SSLSVTTDEI NTYIQQIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235242MKRKRMKK
2241251KKLRQKEQRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.190470.0ear| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC234522.1_FG009
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC234522.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0618680.0BT061868.1 Zea mays full-length cDNA clone ZM_BFb0191I11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008668277.10.0uncharacterized protein LOC100381642 isoform X1
TrEMBLA0A1D6GSK00.0A0A1D6GSK0_MAIZE; C2H2-like zinc finger protein
STRINGAC234522.1_FGP0090.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85032430
Representative plantOGRP36431115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.14e-65C2H2-like zinc finger protein