PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC233952.1_FGP008
Common NameLOC100280366
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 382aa    MW: 41214.1 Da    PI: 6.6722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC233952.1_FGP008genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000621333323
                       ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                       C+ CgksF +  +L  H+r+H
  AC233952.1_FGP008 13 CKVCGKSFLSGRSLGGHMRSH 33
                       *******************99 PP
2zf-C2H2110.0014246268123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+Cp C k Fs+   L  H  +H
  AC233952.1_FGP008 246 YECPGCRKLFSSYQALGGHRASH 268
                        99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.71E-81133No hitNo description
Gene3DG3DSA:3.30.160.606.1E-41134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.9E-81133IPR007087Zinc finger, C2H2
SMARTSM003550.0971133IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3251138IPR007087Zinc finger, C2H2
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
SuperFamilySSF576676.71E-8241268No hitNo description
PfamPF139121.4E-9245269IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598246273IPR007087Zinc finger, C2H2
SMARTSM003550.79246268IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280248268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDVVELDAAR HGCKVCGKSF LSGRSLGGHM RSHISLGEAA LEVHAADELT PVSSNGGRGC  60
DGLVAYGLRE NPRKTRRLSD FADEKDVGHG VECGKSWKSL FGHIRNHASG DRYHDVDDDE  120
DVEEDEFSVE EGEAEEAEMV KPTEAPVAAL TVLSASPRRR RRSMRVAAPP PRVLSGLEKE  180
TEDVALCLLM LSRDTGMCSS PAKNETLESA KKIKIKIKGG VAKNRKRASR KNQHDPVPVA  240
PKRTRYECPG CRKLFSSYQA LGGHRASHKR MNASCSSPKN KITPAASSAP PEPSTETYTS  300
FNTMSPSASP DSVAIGFGKP KDDEAVPDAE LEHKRSHLMS CESNGVDLYY VAGAGADHQE  360
QHSAVADGLL DLNFPPAAAE ET
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC233952.1_FG008
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC233952.1_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560910.0BT056091.1 Zea mays full-length cDNA clone ZM_BFb0006L02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146764.10.0uncharacterized protein LOC100280366
TrEMBLB8A3E90.0B8A3E9_MAIZE; C2H2-like zinc finger protein
STRINGAC233952.1_FGP0080.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Representative plantOGRP1267644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-12C2H2-like zinc finger protein