PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AC233880.1_FGP006

Common Name

pco141536

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

Nin-like

Protein Properties

Length: 284aa MW: 30447.9 Da PI: 7.4703

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AC233880.1_FGP006	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	72.4	6e-23	20	66	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ AC233880.1_FGP006 20 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRTHGIVRWPYRKLV 66 6899*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.438	2	88	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-21	21	66	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MASDAPAEQP ATQQKPTRVS LSYEEISKLF SLPIAEAASI LGVCTSVLKR ICRTHGIVRW 60 PYRKLVSGKA GDDTKGPDSD KANELLEVSK IAKQKAPSAS GPSVVSSSTS QGAAKSQQGN 120 SKAGQFSVSP PTGKHNASLS LTHSQAKAIP CYMDDFKYGF PSSGLSCETM KWWGTSSDTD 180 YVPTKDGSHE PHESTTHEPS KGMTDDDELD WGADEAEAEA DGTVTAEASA QLCSLRRKAV 240 DDGRKLLNGH NRRGQEFSRL NKRQKTALAQ VFGASLPECC ITRV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.27347	0.0	ovary\| pericarp\| pollen\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AC233880.1_FG006

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AC233880.1_FGP006

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT038614	0.0	BT038614.1 Zea mays full-length cDNA clone ZM_BFb0296N20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001140342.1	0.0	uncharacterized protein LOC100272390
TrEMBL	A0A3L6FHK2	0.0	A0A3L6FHK2_MAIZE; Protein RKD2
TrEMBL	B4FNC6	0.0	B4FNC6_MAIZE; RWP-RK transcription factor
STRING	AC233880.1_FGP006	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42
Representative plant	OGRP8668	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	3e-10	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	AC233880.1_FGP006
Entrez Gene	100272390