PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC233871.1_FGP008
Common NameAY110023, C3H32
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 416aa    MW: 45438 Da    PI: 8.5844
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC233871.1_FGP008genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-084264426
                       ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                       ++C++f+r G C+ Gd+C F+Hg
  AC233871.1_FGP008 42 VPCPNFRRPGGCPSGDSCEFSHG 64
                       79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.6E-43865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9953866IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-53967IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-64165IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-74264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-471103IPR000571Zinc finger, CCCH-type
SMARTSM00356217497IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MFAFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKHPYT AVPCPNFRRP GGCPSGDSCE  60
FSHGVFESWL HPSQYRTRLC KEGAACARRI CFFAHDEDEL RHVPHNSGAG LLSPRASSSI  120
DMTAAAAALG LLPGSPTRHF VPPPLSPSAA NNGGGAAAHW LQGSRLRSSF NARDAQADDL  180
GSLLEWESQY LGALSLPQSS RSQPRLSTGL TIRPTAVAPS YLEEMYASDM AMSPRFTNDQ  240
GHSVFSPAHK SALLNKFHHQ QKGLLSPVNT NRMYSPRGLD PSIIHSPFGG MSPRSPRTME  300
LTSPLSVRVG VGAAVTPRDM LDQFSSLNKH QVPSVGSPRN LNASWGNIGT PKSKVDWGVD  360
DDELVRLRHP VQHGNTEDEP DVSWVQSLVN HAELNGKRGE MASMASPSIN KPDLSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5elk_A5e-1149714118RING finger protein unkempt homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.845530.0endosperm| meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC233871.1_FG008
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC233871.1_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0543660.0BT054366.1 Zea mays full-length cDNA clone ZM_BFc0002O06 mRNA, complete cds.
GenBankBT0544470.0BT054447.1 Zea mays full-length cDNA clone ZM_BFc0063F04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001145979.10.0uncharacterized protein LOC100279507
RefseqNP_001335879.10.0uncharacterized protein LOC100279507
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLB7ZYH40.0B7ZYH4_MAIZE; C3H transcription factor
TrEMBLK7UGY00.0K7UGY0_MAIZE; C3H transcription factor (Fragment)
STRINGAC233871.1_FGP0080.0(Zea mays)
STRINGGRMZM5G842019_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.12e-99CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]