PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC216731.3_FGP001
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 295aa    MW: 30617.9 Da    PI: 5.2086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC216731.3_FGP001genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.3e-10209250955
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++RR+ri +++  L+el+P+      +K++ +++LekA+ Y+k Lq
  AC216731.3_FGP001 209 AKNRRERISERLRALQELVPNG-----TKVDLVTMLEKAISYVKFLQ 250
                        69******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.345200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-12201258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-12202254No hitNo description
SuperFamilySSF474591.57E-13202260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-12206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-7209250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MALVREHGGY YGGFDSVEAA AFDTLGYGHG ASLGFDASSA LFGEGGYAAG GGDAWAGAGA  60
STVLAFNRTT AAAAVGVEEE EEECDAWIDA MDEDDQSSGP AAAAPEARHA LTASVGFDAS  120
TGCFTLTERA SSSSGGAGRP FGLLFPSTSS SGGTPERTAP VRVPQKRTYL SAEPQAVSPN  180
KKHCGAGRKA SKAKLASTAP TKDPQSLAAK NRRERISERL RALQELVPNG TKVDLVTMLE  240
KAISYVKFLQ LQVKVLATDE FWPAQGGKAP EISQVREALD AILSSASQSQ RGQLN
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC216731.3_FG001
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC216731.3_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096621e-108AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393370.10.0transcription factor APG
TrEMBLA0A1D6HHV40.0A0A1D6HHV4_MAIZE; Transcription factor bHLH83
STRINGAC216731.3_FGP0010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Representative plantOGRP35321326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.18e-52ROOT HAIR DEFECTIVE6