PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC215909.3_FGP001
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 502aa    MW: 54173.4 Da    PI: 10.2787
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC215909.3_FGP001genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.75.8e-1398147155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++y+ V + + rgr+vA+ rd      + kr +lg+f+taeeAa++++   ++l+g
  AC215909.3_FGP001  98 PRYRSVLRQH-RGRYVARTRDR-----KgKRMWLGTFDTAEEAARRYDSETRRLRG 147
                        6899996555.7******9993.....34*******************99888887 PP
2AP236.21.5e-11246295155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++y+GV +++ rgr+vA+ rd      + kr  lg f+taeeAa++++   ++l+g
  AC215909.3_FGP001 246 PRYRGVLRRR-RGRYVARTRDR-----KgKRMCLGMFDTAEEAARRYDSETRRLRG 295
                        68****8666.8******9993.....34*******************99888887 PP
3AP2422.4e-13365414155
                AP2   1 sgykGV.rwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++y+GV rw+  rgr+vA+ rd      + kr +lg+f+taeeAa+++ +  ++l+g
  AC215909.3_FGP001 365 PRYRGVlRWR--RGRYVARTRDR-----KgKRMWLGTFDTAEEAARRYNNETRRLRG 414
                        68****9997..5******9993.....34******************988888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-798140IPR001471AP2/ERF domain
CDDcd000181.33E-1898156No hitNo description
SuperFamilySSF541712.62E-1499156IPR016177DNA-binding domain
PROSITE profilePS5103217.76799155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-2099156IPR001471AP2/ERF domain
SMARTSM003803.6E-2099161IPR001471AP2/ERF domain
PfamPF008472.4E-6246288IPR001471AP2/ERF domain
PROSITE profilePS5103216.871247303IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-15247304IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.6E-19247304IPR001471AP2/ERF domain
SMARTSM003805.6E-19247309IPR001471AP2/ERF domain
PfamPF008475.6E-7365405IPR001471AP2/ERF domain
CDDcd000185.46E-18365424No hitNo description
SuperFamilySSF541711.11E-15366423IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.4E-19366423IPR001471AP2/ERF domain
SMARTSM003805.6E-20366428IPR001471AP2/ERF domain
PROSITE profilePS5103217.938366422IPR001471AP2/ERF domain
PRINTSPR003673.9E-5367378IPR001471AP2/ERF domain
PRINTSPR003673.9E-5388404IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MDEHYFAADE SQPVVGSPAS TTPPPKPVDA AAETFSMFSS SDEADAGGGA EAAAGPRKFV  60
MEIHMEEHHP RCNATAPTGR VVGGGKRKAA VAGAPAEPRY RSVLRQHRGR YVARTRDRKG  120
KRMWLGTFDT AEEAARRYDS ETRRLRGPSA ITNFPAMSDD RVPLLAPSLQ AVDEHSFAAD  180
ESQPVVGSPV STTPLGEPVD AAGSRKFVME IHMEEHRPRC NATTPTGRVA SGGKRKAAAA  240
SAPAEPRYRG VLRRRRGRYV ARTRDRKGKR MCLGMFDTAE EAARRYDSET RRLRGPSAIT  300
NFPATSDDRV PLPAPSLHNV DEHSFAADES QPVEHHPRCN ATAPTGRVAG GGKRKAVAAS  360
APAEPRYRGV LRWRRGRYVA RTRDRKGKRM WLGTFDTAEE AARRYNNETR RLRGPSAITN  420
FPATSDDRVL LPAPSLHAVD EHSFAADESR SVVGSPVSTT PPPKPMDATA ETLSTFSSSD  480
EADAGGGAEA AAGPSGGPRI LT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233255KRKAAAASAPAEPRYRGVLRRRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC215909.3_FG001
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC215909.3_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277130.0KJ727713.1 Zea mays clone pUT5652 AP2-EREBP transcription factor (EREB123) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020396639.11e-134AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A1D6JRM70.0A0A1D6JRM7_MAIZE; Uncharacterized protein
TrEMBLA0A1D6JRM90.0A0A1D6JRM9_MAIZE; Uncharacterized protein
STRINGAC215909.3_FGP0010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-16ERF family protein