PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC213666.3_FGP003 | ||||||||
Common Name | EREB70, ZEAMMB73_633288 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 163aa MW: 18506.7 Da PI: 7.6425 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.9 | 6.9e-10 | 3 | 48 | 2 | 51 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +++GV+ ++ grWvAe r +r+r ++g+f t+ e ++a++ + k AC213666.3_FGP003 3 RCRGVY-ERQPGRWVAEFRSH---RHRTREWIGTFATEVESRAAYDDFEK 48 79***8.777*******4442...235**********99*******9977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.7E-4 | 3 | 65 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.049 | 3 | 61 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-10 | 3 | 53 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-6 | 4 | 48 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-12 | 5 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MKRCRGVYER QPGRWVAEFR SHRHRTREWI GTFATEVESR AAYDDFEKHF MQSRRCNLPL 60 PALEKRGGRA AGVNRSCALP RRQRHPPPEI EKKRQIVHTT LAANSSTSAT PPPPPLENNA 120 QPQHADALPS AHSVWADEPA GEDLPDLDTD FGPLDLSLFD DFF |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC213666.3_FG003 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC213666.3_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727701 | 0.0 | KJ727701.1 Zea mays clone pUT5640 AP2-EREBP transcription factor (EREB70) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008680186.1 | 1e-118 | ethylene-responsive transcription factor ABI4 | ||||
TrEMBL | K7U098 | 1e-117 | K7U098_MAIZE; AP2-EREBP transcription factor | ||||
STRING | AC213666.3_FGP003 | 1e-118 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14003 | 20 | 23 | Representative plant | OGRP17021 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65130.1 | 1e-10 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | AC213666.3_FGP003 |
Entrez Gene | 103655170 |