PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G65130.1 | ||||||||
Common Name | ERF057, MQN23.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 277aa MW: 31210.4 Da PI: 7.0463 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.1e-19 | 110 | 159 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr p++ r+r +lg+f ta+eAa a+++a+ k++g AT5G65130.1 110 LYRGVRQRQ-WGKWVAEIRLPKN---RTRLWLGTFETAQEAALAYDQAAHKIRG 159 59****999.**********965...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.07E-33 | 109 | 168 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.0E-32 | 110 | 168 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.8 | 110 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-35 | 110 | 173 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-22 | 110 | 168 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.3E-13 | 111 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-11 | 111 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-11 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MALNMNAYVD EFMEALEPFM KVTSSSSTSN SSNPKPLTPN FIPNNDQVLP VSNQTGPIGL 60 NQLTPTQILQ IQTELHLRQN QSRRRAGSHL LTAKPTSMKK IDVATKPVKL YRGVRQRQWG 120 KWVAEIRLPK NRTRLWLGTF ETAQEAALAY DQAAHKIRGD NARLNFPDIV RQGHYKQILS 180 PSINAKIESI CNSSDLPLPQ IEKQNKTEEV LSGFSKPEKE PEFGEIYGCG YSGSSPESDI 240 TLLDFSSDCV KEDESFLMGL HKYPSLEIDW DAIEKLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 109 | 173 | 4 | 69 | ATERF1 |
3gcc_A | 2e-22 | 109 | 173 | 4 | 69 | ATERF1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 247227_at | 0.0 | ||||
Expression Atlas | AT5G65130 | - | ||||
AtGenExpress | AT5G65130 | - | ||||
ATTED-II | AT5G65130 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00585 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G65130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q9FJQ2 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G65130 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB013395 | 0.0 | AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23. | |||
GenBank | AY560858 | 0.0 | AY560858.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g65130) mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | DQ447109 | 0.0 | DQ447109.1 Arabidopsis thaliana clone pENTR221-At5g65130 AP2 domain-containing transcription factor (At5g65130) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001329953.1 | 0.0 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q9FJQ2 | 0.0 | ERF57_ARATH; Ethylene-responsive transcription factor ERF057 | ||||
TrEMBL | A0A178UIA0 | 0.0 | A0A178UIA0_ARATH; Integrase-type DNA-binding superfamily protein | ||||
TrEMBL | A0A384KZF9 | 0.0 | A0A384KZF9_ARATH; Uncharacterized protein | ||||
STRING | AT5G65130.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13499 | 17 | 28 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT5G65130.1 |
Entrez Gene | 836637 |
iHOP | AT5G65130 |
wikigenes | AT5G65130 |