PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC213524.3_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 276aa MW: 29555.2 Da PI: 10.4612 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 57.6 | 5.4e-18 | 137 | 178 | 2 | 43 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdk 43 a+k+++++++hTkv+gR+RR+ ++a+caar+F+L++eL + AC213524.3_FGP003 137 APKRSSNKDRHTKVDGRGRRIWMPALCAARIFQLTRELDHNG 178 789************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.9E-13 | 142 | 177 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 10.293 | 143 | 197 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MTVLHHSHLP TDTKAGAPVT KQKKGSESTK PDLVCFLLPR LGGSWCLCVS VCGDGPQVPP 60 PPPLNKTEPT TATTTTTSTA QQQQLDPKDY HQQQQPAQHL QIQIHQSPQQ DGGGRGKEEE 120 QLQVVAQPGE RRQQPLAPKR SSNKDRHTKV DGRGRRIWMP ALCAARIFQL TRELDHNGER 180 EDMERNRVRA WRLSSSVVAR TAAGAAGAGR GIAGGGMRPR ILPPARYGGG IGMEEESRDG 240 TGRPVFAAGM AAGGSWQTSG RTGLGSGGSL QSSLNS |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC213524.3_FG003 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC213524.3_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT043390 | 0.0 | BT043390.1 Zea mays full-length cDNA clone ZM_BFc0176F09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008650667.1 | 1e-170 | transcription factor TCP8 | ||||
Refseq | XP_008666499.1 | 1e-170 | transcription factor TCP8 | ||||
TrEMBL | A0A1D6KJT5 | 0.0 | A0A1D6KJT5_MAIZE; Transcription factor TCP11 | ||||
STRING | AC213524.3_FGP003 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 1e-19 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | AC213524.3_FGP003 |