PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC205471.4_FGP003
Common NameZEAMMB73_407508, Zm.143829
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 446aa    MW: 49718.5 Da    PI: 4.9639
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC205471.4_FGP003genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34131042102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl k+ye++ed+++++++sw   g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+++l
  AC205471.4_FGP003  13 FLIKTYEMVEDPATNHVVSWGPGGASFVVWNPPDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANDDFVRGHTHL 95 
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  AC205471.4_FGP003  96 LKNIHRRKP 104
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.1E-39597IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-368102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.3E-639102IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.8E-3113102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-201336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-205163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEGSNSSSQP PPFLIKTYEM VEDPATNHVV SWGPGGASFV VWNPPDFSRD LLPKYFKHNN  60
FSSFIRQLNT YGFRKIDPER WEFANDDFVR GHTHLLKNIH RRKPVHSHSP QTQVNGPLAE  120
SERRELEDEI SRLKYEKSLL LTDLQRQSQQ RCGISWQMQS LERRLAQMEE RQRNIVASLR  180
DILLPVGHGV VSWGSATGAD HFSKKRRVPK MDFFVDEPKV EEQQVPFLQT VGAETPGMSP  240
IRLLSAEPFE KMELALVSLE SFLQRATAHT SAAQGMLYAA GVAEPSPALA LGEMLSAPMD  300
TEIDLQPSAC QNPFASTSGQ DQSSSPLAEP PSYYAQSPML PMAQLHEHAH RTAAGVDMNS  360
DTTTGDTSQD DTTSETGGSH VPAKVNDVFW ERFLTDAAEG KSEAIEAKED VKTAVDRCCP  420
RLQDNVDQIT EQMGQLDSAS YAPENY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-24310219129Heat shock factor protein 1
5d5v_B3e-24310219129Heat shock factor protein 1
5d5v_D3e-24310219129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.44070.0ear| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC205471.4_FG003
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Hardly expressed in young leaves at 14 days after sowing (DAS). Expression detected in adult leaves at 28 DAS and increases with growing stage. {ECO:0000269|PubMed:12032317}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC205471.4_FGP003
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2085471e-171KF208547.1 Triticum aestivum heat shock factor A4e (HsfA4e) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656477.10.0heat stress transcription factor A-4d
SwissprotQ93VB51e-157HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLA0A1D6FU610.0A0A1D6FU61_MAIZE; Heat stress transcription factor A-4a
STRINGAC205471.4_FGP0030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Representative plantOGRP1286345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.18e-72heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]