PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC198725.4_FGP009
Common NameLOC100281232, WRKY64
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 352aa    MW: 38331.3 Da    PI: 7.3073
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC198725.4_FGP009genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.23e-32198255259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+
  AC198725.4_FGP009 198 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 255
                        8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-34182257IPR003657WRKY domain
SuperFamilySSF1182907.06E-29190257IPR003657WRKY domain
PROSITE profilePS5081131.066192257IPR003657WRKY domain
SMARTSM007741.6E-37197256IPR003657WRKY domain
PfamPF031062.0E-25198255IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MSSGGGDHHG VYHQQHGHGH GHLARADGAE YAFHGNDDME SFFFNHPASA GLDGGGSRTT  60
GADELLAPYS SITDYLQGLL DPSGLARHLD APLKHELSVD ASHDSQGTSG APGGEAAAMH  120
TPNSSVSLSS SDRDGEGQQP RRCKKGRTNK AEDAEGDEKD QQDGENSTKA NKSKKKAEKR  180
QRQPRVAFLT KSEVDHLEDG YRWRKYGQKA VKNSPYPRSY YRCTTPKCGV KKRVERSYQD  240
PSTVITTYEG QHTHHSPASL RAGGAHLFMS SAHALPPHLT MPSSSFRPDL NLMSMMHPAM  300
VGANPNMFLP SMPPPPHMST PSPAPDPPLQ QHHFTDYALL QDLFPSTMPN NP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-291902581078Probable WRKY transcription factor 4
2lex_A1e-291902581078Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC198725.4_FG009
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC198725.4_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0394690.0BT039469.1 Zea mays full-length cDNA clone ZM_BFc0014O13 mRNA, complete cds.
GenBankEU9560250.0EU956025.1 Zea mays clone 1555761 WRKY11 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147623.10.0uncharacterized protein LOC100281232
TrEMBLB4FQT10.0B4FQT1_MAIZE; Putative WRKY transcription factor 71
STRINGAC198725.4_FGP0090.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-44WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]