PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC185655.3_FGP004
Common NameLOC103648578
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 472aa    MW: 50227.3 Da    PI: 6.9005
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC185655.3_FGP004genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05310332123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp C+ksFs++  L  H+ +H
  AC185655.3_FGP004 310 HTCPTCPKSFSTHQALGGHMASH 332
                        79******************999 PP
2zf-C2H213.40.00023407429123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC  C+ksFs+   L  H r+H
  AC185655.3_FGP004 407 HKCDECTKSFSSGQALGGHKRKH 429
                        79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00685779IPR015880Zinc finger, C2H2-like
PfamPF139124.7E-65781IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-4308335IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.05E-9308332No hitNo description
SMARTSM003550.0044310332IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408310337IPR007087Zinc finger, C2H2
PfamPF139128.4E-8310332IPR007087Zinc finger, C2H2
PROSITE patternPS000280312332IPR007087Zinc finger, C2H2
SuperFamilySSF576676.05E-9402429No hitNo description
Gene3DG3DSA:3.30.160.603.2E-5406429IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.048407429IPR015880Zinc finger, C2H2-like
PfamPF139125.6E-12407431IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.45407434IPR007087Zinc finger, C2H2
PROSITE patternPS000280409429IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MNSRALQLQL QAAAAAAPVH AGEDGEPEAT PKAPLLKIQG QGSGLARSMG TTTGNATKCP  60
ECPKWFPSLK AMCGHLRQHP DRDYRGATRP TPATISAAAA VSVAVAGDNE PTNKVPRKES  120
VVVAINMVAA AATAVQKQPW EEAETQWPAK AKRGRTHVAP MQASSISEEE EAAMEEEAAM  180
ILLEMSRTSS ETQRQQQPVE PVRSPYAVSG HQIQTTSVVE ELMQQQTPEN ALELSAESQT  240
SVAKHVTDLV EAVLIMVPAN KAIFPSLNSG AGDKKPKKRW VRNPVHTAAS TTSPPPPEGA  300
VRTPPAGKMH TCPTCPKSFS THQALGGHMA SHVKNKTTSA RHDDHAAAHA VIKPDVLAHS  360
DQSAGNGDVD IIPASSGAGK GGALQERQDA QPPPARAPTP PQTSAPHKCD ECTKSFSSGQ  420
ALGGHKRKHW SLEKQQARAA LFAPVIEPEP ELRDFDLNEL PKEEQDEDNN QP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC185655.3_FG004
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC185655.3_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008671250.10.0uncharacterized protein LOC103648578
TrEMBLA0A1D6E8Q50.0A0A1D6E8Q5_MAIZE; OSJNBa0089K21.8-like protein
STRINGAC185655.3_FGP0040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425
Representative plantOGRP1097248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.13e-13C2H2 family protein