PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC149818.2_FGP008
Common NameLOC103639566, ZEAMMB73_258083
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 551aa    MW: 58837.4 Da    PI: 6.9963
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC149818.2_FGP008genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05440465123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        ++C+  +C+++F++k +L  H ++ +
  AC149818.2_FGP008 440 FECKidYCHMTFKTKAELAAHKKNmC 465
                        89*******************99866 PP
2zf-C2H212.10.00062523547123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ykC    C+k+F+  s+++rH r++
  AC149818.2_FGP008 523 YKCMtpGCSKMFKFVSDFTRHRRRC 547
                        899999*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035516440462IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.302463492IPR007087Zinc finger, C2H2
SMARTSM003554463487IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280465487IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-5468494IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.37E-10478521No hitNo description
PROSITE profilePS5015711.281493522IPR007087Zinc finger, C2H2
SMARTSM003550.0023493517IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-6495513IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280495517IPR007087Zinc finger, C2H2
SuperFamilySSF576679.68E-8511546No hitNo description
Gene3DG3DSA:3.30.160.601.6E-8514545IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704523551IPR007087Zinc finger, C2H2
SMARTSM0035528523545IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MRIRRYAARL LSATTAAPSS PPRPPAASWL HTDDDDDCCA FCELSRPAPQ EGQDAVKHKG  60
HIAGRVPESD VRADERVGLH QRPPAPEVKK CKIDHVPPVD KSSVGLQVVK CASEVSGAVA  120
KPEGGTPASE AAAGPAAKAG AFVVNDAASE QGVQCIASPL GGASKLEEVT AGNSFANGPT  180
TELGVFKGAS LANELADVPG VTSIMPEVIG KPSTDPGAIT TVVEVSDIGS VVHETTELES  240
AGEDYIASEA AAEPEDAGRA SCNTDDTAAL DEPLPPSCDP NIGNAQVGNA MDTVASTVRP  300
SRCDAAEEGA SVNSTANGPV RARGPTVKGG VPKDKSVAPS VLRVLDVVTR SIGKSGRTDV  360
ICYARRTGKR KPELQEVKTE NIDLEDGVLC EKEEALLRTD CCESVLSTAG SIDVKLADIK  420
KDLMDNSAAS KVTKMKRNIF ECKIDYCHMT FKTKAELAAH KKNMCTVNSC SKHFRSHSYL  480
RRHESAHNDD MPYKCPWDGC NMAFKWSWDR AEHFKVHAGA KPYKCMTPGC SKMFKFVSDF  540
TRHRRRCKPQ R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-3744054623129Lysine-specific demethylase REF6
6a58_A1e-3744054623129Lysine-specific demethylase REF6
6a59_A1e-3744054623129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364370RRTGKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.395560.0ear| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC149818.2_FG008
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC149818.2_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008660521.10.0uncharacterized protein LOC103639566
TrEMBLK7VLT20.0K7VLT2_MAIZE; Metal regulatory transcription factor 1
STRINGAC149818.2_FGP0080.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Representative plantOGRP1198156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.13e-38relative of early flowering 6