PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015902714.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 599aa MW: 67200.9 Da PI: 4.825

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015902714.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	300.7	3.5e-92	225	596	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetseknsseelaalkl....fsevsP 89 lvelLl+ Ae v +++e+a++lL++ l+s++g+p+qRl+ yf eAL++r+ r ++ k l + + +e+++ l+l f P XP_015902714.1 225 LVELLLASAEKVGCQQFERASKLLNQCDILSSNTGNPVQRLVYYFSEALRERIDReTGRFALKGLgDKGAFD---IDEAIMPLNLinlaFLTGIP 316 689**************************************************44444555553333444...55555555555559** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 + ++ ++ a qaIle v++++++HiiD+ i++G+QW L+qaL+sR+e p l+i +vg ++k+ +e tg+rL +fA++l++pf+f+++++ XP_015902714.1 317 FCQLVQFSATQAILENVSEAKKIHIIDLRIKNGVQWTVLMQALTSRKECPLeLLKISAVGT---TRKNLIEDTGKRLLSFAQSLNLPFSFKTVMV 408 ******************************************96655499***...57999********************** PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 +++ dl+ + ++++ +E++aV + + l+++l ++ +les ++k++++++P v+vv+e e +hns+ F++rf+ea+ ++ a fd+lea l r+ XP_015902714.1 409 RDMVDLKEDLFELDADETVAVYSPYTLKSMLPQPNTLES----LMKMIRNIKPCVMVVAEIEGNHNSPAFVNRFTEAFFFFGAYFDCLEAFLKRD 499 ***************************99999999....************************************************ PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 + +r+ E +lgr+i+n+va+eg++r+ rh + + Wr+ + ++G+ ++++s+ qakll++ + + +++ + ++l+ gWk+ pL+svS+ XP_015902714.1 500 DPNRMIAESLYLGRSISNIVATEGEKRQTRHVKINVWRAFFARFGLLEAEFSTASLYQAKLLVNSSScGSSCTLDMNGKCLLVGWKGTPLLSVSV 594 ***************************************************************9999********************** PP GRAS 373 Wr 374 W+ XP_015902714.1 595 WK 596 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.203	199	575	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-89	225	596	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence Send to blast
MEDITFCFEQ FSYDGVEDKL GSTDKDFEST KKINIGKNFV LHGAEDQQVS IGNNSLCSDY 60 PFYGDGCLQE GFPFSKHQQE LQQQQQSISD CGLLDDLHFD AFSPPLQTCI EEIEKFGKFP 120 TTIPNVEAKK EKENPFPLAA LELLKNYGSG FKRLNAERIV EPNNDAAACI EMENQGLSTE 180 EIVRVAGARF IQYTSQAGEV PSMPSHPFEL SLLGLSHEEI KDVELVELLL ASAEKVGCQQ 240 FERASKLLNQ CDILSSNTGN PVQRLVYYFS EALRERIDRE TGRFALKGLG DKGAFDIDEA 300 IMPLNLINLA FLTGIPFCQL VQFSATQAIL ENVSEAKKIH IIDLRIKNGV QWTVLMQALT 360 SRKECPLELL KISAVGTTRK NLIEDTGKRL LSFAQSLNLP FSFKTVMVRD MVDLKEDLFE 420 LDADETVAVY SPYTLKSMLP QPNTLESLMK MIRNIKPCVM VVAEIEGNHN SPAFVNRFTE 480 AFFFFGAYFD CLEAFLKRDD PNRMIAESLY LGRSISNIVA TEGEKRQTRH VKINVWRAFF 540 ARFGLLEAEF STASLYQAKL LVNSSSCGSS CTLDMNGKCL LVGWKGTPLL SVSVWKFLT

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence Send to blast

MEDITFCFEQ FSYDGVEDKL GSTDKDFEST KKINIGKNFV LHGAEDQQVS IGNNSLCSDY  60
PFYGDGCLQE GFPFSKHQQE LQQQQQSISD CGLLDDLHFD AFSPPLQTCI EEIEKFGKFP  120
TTIPNVEAKK EKENPFPLAA LELLKNYGSG FKRLNAERIV EPNNDAAACI EMENQGLSTE  180
EIVRVAGARF IQYTSQAGEV PSMPSHPFEL SLLGLSHEEI KDVELVELLL ASAEKVGCQQ  240
FERASKLLNQ CDILSSNTGN PVQRLVYYFS EALRERIDRE TGRFALKGLG DKGAFDIDEA  300
IMPLNLINLA FLTGIPFCQL VQFSATQAIL ENVSEAKKIH IIDLRIKNGV QWTVLMQALT  360
SRKECPLELL KISAVGTTRK NLIEDTGKRL LSFAQSLNLP FSFKTVMVRD MVDLKEDLFE  420
LDADETVAVY SPYTLKSMLP QPNTLESLMK MIRNIKPCVM VVAEIEGNHN SPAFVNRFTE  480
AFFFFGAYFD CLEAFLKRDD PNRMIAESLY LGRSISNIVA TEGEKRQTRH VKINVWRAFF  540
ARFGLLEAEF STASLYQAKL LVNSSSCGSS CTLDMNGKCL LVGWKGTPLL SVSVWKFLT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-38	244	596	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015902714.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015902714.1	0.0	DELLA protein RGL1-like
TrEMBL	M5XKD7	0.0	M5XKD7_PRUPE; Uncharacterized protein
STRING	EMJ25971	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-54	RGA-like 1