PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015902193.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 20824.4 Da PI: 10.2825 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.6e-19 | 41 | 92 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ ng r++lg++ ae+Aa a+++a+ k++g+ XP_015902193.1 41 QYRGVRRRP-WGKYAAEIRDPKRNG--SRIWLGTYENAEDAALAYDRAAFKMRGA 92 59*******.**********98776..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.67 | 41 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-32 | 41 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-23 | 41 | 100 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.24E-28 | 41 | 101 | No hit | No description |
SMART | SM00380 | 8.3E-37 | 41 | 105 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 42 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-13 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-13 | 81 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MAVEMGPTAG PTVGPTVVTV TETDVVPPDQ SNNNKPRRGW QYRGVRRRPW GKYAAEIRDP 60 KRNGSRIWLG TYENAEDAAL AYDRAAFKMR GAKAKLNFPH LIGSGAPEPV RVSPKRRSPD 120 ASSSSYSWDS GSPKHKRREL VGSRAAKAES STVCSSVEVF QMAPLTPGDQ GLNDYNVGLS 180 SPPGFFMCGW L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-30 | 38 | 105 | 2 | 69 | ATERF1 |
3gcc_A | 1e-30 | 38 | 105 | 2 | 69 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015902193.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015902193.1 | 1e-139 | ethylene-responsive transcription factor 2-like | ||||
Swissprot | Q40479 | 1e-47 | ERF2_TOBAC; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A314ZC26 | 4e-51 | A0A314ZC26_PRUYE; Ethylene-responsive transcription factor 1 | ||||
STRING | XP_008232470.1 | 3e-50 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-24 | ethylene-responsive element binding factor 13 |
Publications ? help Back to Top | |||
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