PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015902185.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 220aa    MW: 24188 Da    PI: 6.8871
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015902185.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.6e-17116166255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng   r +lg++  ae+Aa a+++a+ +++g
  XP_015902185.1 116 HYRGVRRRP-WGKYAAEIRDPAKNG--SRQWLGTYERAEDAALAYDRAAFEMRG 166
                     7********.***********9987..999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-30115175IPR001471AP2/ERF domain
SMARTSM003809.2E-36116180IPR001471AP2/ERF domain
PROSITE profilePS5103222.945116174IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-22116175IPR016177DNA-binding domain
PfamPF008475.7E-11116166IPR001471AP2/ERF domain
CDDcd000183.92E-27116176No hitNo description
PRINTSPR003677.5E-13117128IPR001471AP2/ERF domain
PRINTSPR003677.5E-13156176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MYGEIGLEDS DLSLLDSIYQ QLLHDSEVPL PDQHVPVPTF NGLLLPANCS FPDAAADTVS  60
VFDFGWFPTT DQVVLSEGMV ADGNTIQTEP FQEKAGSAAQ FKAARGSHAS RIGERHYRGV  120
RRRPWGKYAA EIRDPAKNGS RQWLGTYERA EDAALAYDRA AFEMRGCKAK LNFPHLIGSS  180
NRAEPVRVTH KRRSLDHPAL SSTSTSFDSG SGIPKQLRLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-30115179468ATERF1
3gcc_A3e-30115179468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015902185.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015902185.11e-164ethylene-responsive transcription factor 13-like
TrEMBLA0A2P6SFC75e-51A0A2P6SFC7_ROSCH; Putative transcription factor AP2-EREBP family
STRINGXP_008232505.16e-48(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-30ethylene-responsive element binding factor 13