PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015902183.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 268aa    MW: 29453.8 Da    PI: 6.3661
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015902183.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-20132183256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+++AeIrdp++ng  +r++lg++ tae+Aa a+++a+ k++g+
  XP_015902183.1 132 HYRGVRRRP-WGKYAAEIRDPKKNG--ARVWLGTYETAEDAALAYDKAAFKMRGA 183
                     69*******.***********9998..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-14132182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-33132191IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-23132191IPR016177DNA-binding domain
PROSITE profilePS5103224.197132190IPR001471AP2/ERF domain
SMARTSM003801.4E-38132196IPR001471AP2/ERF domain
CDDcd000189.70E-31132192No hitNo description
PRINTSPR003671.3E-10133144IPR001471AP2/ERF domain
PRINTSPR003671.3E-10156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSTGGSLLEQ SDFALLESIR QHLLLDDIFD TVEASFPASF DYTAPPSYCR TSSFGGLFMA  60
DNWNGHLPFK ADNSDDMVLY GALSDAVSSG WSPSYGADEV SLPTVKVETQ EEVVNQAVKV  120
ERAAHAPTRG MHYRGVRRRP WGKYAAEIRD PKKNGARVWL GTYETAEDAA LAYDKAAFKM  180
RGAKAKLNFP HLIGSGISEP VRITPKRRLP EPSSPSSSSS SETVSSKPKR RCGVESAVRT  240
ESDNESSQVN QFSDQWVYNC NSMLSNLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-33128196169ATERF1
3gcc_A3e-33128196169ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00311DAPTransfer from AT2G44840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015902183.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015902183.10.0ethylene-responsive transcription factor 2-like
SwissprotQ8L9K13e-63ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A251QFB21e-81A0A251QFB2_PRUPE; Uncharacterized protein
STRINGXP_008232470.11e-82(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-53ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]