PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015901520.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family BBR-BPC
Protein Properties Length: 231aa    MW: 25217.9 Da    PI: 10.7988
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015901520.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind249.52.2e-7653231126301
       GAGA_bind 126 lreeeklealpieeaaeeakekkkkkk..rqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtG 217
                     ++   + + +p+ e +++++ ++k+ k  rq++++  ++ka k+k+ ++++  ++k++++  +++k+ekk+ +l +++++++ s++P P CsCtG
  XP_015901520.1  53 ISVAPIRSIPPVAEPTKNTDSASKPAKvrRQKGATHVASKALKPKQMKKNPSTSKKTKGQTiPQAKREKKNPNLDMEKINFNFSGVPSPYCSCTG 147
                     3334445566777766666665555541144555566677778888888888888888877899******************************* PP

       GAGA_bind 218 alrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     ++r+CYkWG+GGWqS+CCt++iS yPLP+s+ r gaR+agrKmS+ga+ klL kLa+eGydls pvDLk hWA+HGtnkfvti+
  XP_015901520.1 148 IPRVCYKWGAGGWQSSCCTINISEYPLPMSPSRSGARMAGRKMSNGAYVKLLLKLATEGYDLSRPVDLKGHWARHGTNKFVTIK 231
                     ***********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.5E-7615231IPR010409GAGA-binding transcriptional activator
PfamPF062171.6E-6967231IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGTYSNRNPI MPNANAGASV SHFSWFYPGT FFPSSKASSN TLHETQSNLE PGISVAPIRS  60
IPPVAEPTKN TDSASKPAKV RRQKGATHVA SKALKPKQMK KNPSTSKKTK GQTIPQAKRE  120
KKNPNLDMEK INFNFSGVPS PYCSCTGIPR VCYKWGAGGW QSSCCTINIS EYPLPMSPSR  180
SGARMAGRKM SNGAYVKLLL KLATEGYDLS RPVDLKGHWA RHGTNKFVTI K
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015901520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015901519.11e-172protein BASIC PENTACYSTEINE7 isoform X2
RefseqXP_015901520.11e-172protein BASIC PENTACYSTEINE7 isoform X2
RefseqXP_024923288.11e-172protein BASIC PENTACYSTEINE7 isoform X2
SwissprotO822864e-70BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A2N9GYJ81e-121A0A2N9GYJ8_FAGSY; Uncharacterized protein
STRINGcassava4.1_015308m1e-107(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.41e-72basic pentacysteine 7