PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015899962.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 764aa MW: 87167.1 Da PI: 6.8192

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015899962.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.3	7.1e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++Ak+ GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k++ +w++t +++ HnHel XP_015899962.1 59 EYYCTFAKQFGFSIRRNRTRGKdGVGRGVTRRDFTCHRGGYPQMKLSEDGKMQRNRKSSRCGCQAYMRIVKRThfdVPEWRITGFSNIHNHELL 152 69*************999874556679***************9***************98888777789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-17	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-17	275	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.656	539	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.9E-7	561	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-6	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence Send to blast
MSEGTSLIIE SSENGTDLSQ DDIGTMEETP EDTILSRQTS VNLVPFIGQR FVSQESAYEY 60 YCTFAKQFGF SIRRNRTRGK DGVGRGVTRR DFTCHRGGYP QMKLSEDGKM QRNRKSSRCG 120 CQAYMRIVKR THFDVPEWRI TGFSNIHNHE LLKSNEVCLL PAYSTLSPDD KSRICMFAKA 180 GMSARQMLRL MELEKGVRLG CLPFTEVDIR NLLQSFRNID RDNDAIDLIA MCKKMKDENS 240 NFKYDFKIDG HNRLQYISWS YASSVQLYEA FGDAVIFDTS HCLDAYDMLV GVWLGVDNHG 300 MTCFFGCVLL REENMQSFSW ALKTFLGFMK GKAPQTILTD HNMWLKEAIA TEMAQTKHAF 360 CILHIIAKFS DWFSVLLGSR YDEWKAEFHR LYNLDSVEDF EQEWKEMANN YGLNTNKHII 420 SLYTLRTFWA LAFLKHYFFA GMMHTSQTNS VNAFIQRFLS AQSQLDRFVE QLADIVEFKD 480 RAGAKQRMQQ KGQRFCLKTG SPIESHASSV LTPYAFGKLQ EELILAPQYA SILVDEDCFQ 540 VRHHTQMDGA WKVIWHPCQE HISCSCHLFE FSGILCRHVL RVLSTNNCFR IPDQYLPLRW 600 RGLSSSSTNA FQPMPIREHS RKVQFLESLS SALVAESVQS EEHLDAACEQ VSMVVSHIKD 660 LPKAVHGAND IPNDISYNRP SDSLILQEVE DADGIVNFSI GNPHESITLG KLKEKRLGVG 720 DDTSKKRRHC SGLCCGHCGQ YGYDASECHI MGGDNLNGEA LGYL

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence Send to blast

MSEGTSLIIE SSENGTDLSQ DDIGTMEETP EDTILSRQTS VNLVPFIGQR FVSQESAYEY  60
YCTFAKQFGF SIRRNRTRGK DGVGRGVTRR DFTCHRGGYP QMKLSEDGKM QRNRKSSRCG  120
CQAYMRIVKR THFDVPEWRI TGFSNIHNHE LLKSNEVCLL PAYSTLSPDD KSRICMFAKA  180
GMSARQMLRL MELEKGVRLG CLPFTEVDIR NLLQSFRNID RDNDAIDLIA MCKKMKDENS  240
NFKYDFKIDG HNRLQYISWS YASSVQLYEA FGDAVIFDTS HCLDAYDMLV GVWLGVDNHG  300
MTCFFGCVLL REENMQSFSW ALKTFLGFMK GKAPQTILTD HNMWLKEAIA TEMAQTKHAF  360
CILHIIAKFS DWFSVLLGSR YDEWKAEFHR LYNLDSVEDF EQEWKEMANN YGLNTNKHII  420
SLYTLRTFWA LAFLKHYFFA GMMHTSQTNS VNAFIQRFLS AQSQLDRFVE QLADIVEFKD  480
RAGAKQRMQQ KGQRFCLKTG SPIESHASSV LTPYAFGKLQ EELILAPQYA SILVDEDCFQ  540
VRHHTQMDGA WKVIWHPCQE HISCSCHLFE FSGILCRHVL RVLSTNNCFR IPDQYLPLRW  600
RGLSSSSTNA FQPMPIREHS RKVQFLESLS SALVAESVQS EEHLDAACEQ VSMVVSHIKD  660
LPKAVHGAND IPNDISYNRP SDSLILQEVE DADGIVNFSI GNPHESITLG KLKEKRLGVG  720
DDTSKKRRHC SGLCCGHCGQ YGYDASECHI MGGDNLNGEA LGYL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015899962.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015899962.1	0.0	protein FAR1-RELATED SEQUENCE 11-like isoform X1
Refseq	XP_015899963.1	0.0	protein FAR1-RELATED SEQUENCE 11-like isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2N9EMT4	0.0	A0A2N9EMT4_FAGSY; Uncharacterized protein
STRING	EMJ26407	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]