PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015899926.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 213aa MW: 23744.2 Da PI: 10.031

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015899926.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.3e-05	52	74	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + Fs++ L H++ H XP_015899926.1 52 FECQYCRREFSNSQALGGHQNAH 74 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.11E-6	48	79	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.0E-4	50	78	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.884	52	79	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	54	74	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MSAFSSSSSS SSSSSSSSLK LFGFPVTGCD QMTVTRTAPP SDHHHDFDRK RFECQYCRRE 60 FSNSQALGGH QNAHKRERQL AKRAEFQAQQ HYYQHQRFAV PLNIAAHGLR SGPSINHHQY 120 HSSGSIMAIG SAAARFHNNS NVSSSWPMSS AVGPREHEEK MFMNINGKSA PVSEDLRPRR 180 GAYNNNIGQA NNEANLEDVD LHLRLAPSKY TKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015899926.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015899926.1	1e-159	zinc finger protein 6-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3903	24	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58070.1	3e-13	C2H2 family protein