PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015899747.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 361aa MW: 41820.7 Da PI: 9.106 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00077 | 18 | 40 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +Cg + s ks+ H+ tH XP_015899747.1 18 YFCDYCGICRSKKSLVAAHMLTH 40 78********************6 PP | |||||||
2 | zf-C2H2 | 20.8 | 1e-06 | 64 | 85 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cg sF+ + +Lk+H+++H XP_015899747.1 64 TCPECGVSFKKPAYLKQHLQSH 85 6*******************99 PP | |||||||
3 | zf-C2H2 | 14.9 | 7.8e-05 | 91 | 115 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ C+ s++rk++L+rH+ H XP_015899747.1 91 YRCSveGCHSSYRRKDHLTRHLLQH 115 99*******************9887 PP | |||||||
4 | zf-C2H2 | 11.6 | 0.00087 | 120 | 145 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp +C++ F + n krH r H XP_015899747.1 120 FRCPieNCNREFAIQGNVKRHGRQlH 145 89*******************98777 PP | |||||||
5 | zf-C2H2 | 18.9 | 4e-06 | 157 | 181 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk+F+ s L++H+ +H XP_015899747.1 157 YVCQeiGCGKVFRFASRLQKHLDSH 181 99********************998 PP | |||||||
6 | zf-C2H2 | 19 | 3.9e-06 | 248 | 272 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C+ +Fs+ksnL++H r H XP_015899747.1 248 KCNykGCDHTFSNKSNLQQHVRAvH 272 69999****************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 15 | 18 | 40 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.048 | 63 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0075 | 63 | 85 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.3E-7 | 64 | 84 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.22E-10 | 64 | 115 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 65 | 85 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.7E-11 | 85 | 117 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.66 | 91 | 120 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0068 | 91 | 115 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 93 | 115 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.86E-6 | 101 | 150 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.4E-4 | 118 | 140 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.383 | 120 | 150 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.5 | 120 | 145 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 122 | 145 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.0E-7 | 151 | 181 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.11E-5 | 152 | 181 | No hit | No description |
PROSITE profile | PS50157 | 10.845 | 157 | 186 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0029 | 157 | 181 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 159 | 181 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.2 | 189 | 214 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 191 | 214 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 18 | 217 | 238 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.42E-7 | 230 | 284 | No hit | No description |
PROSITE profile | PS50157 | 12.736 | 247 | 277 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.6E-4 | 247 | 272 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.5E-7 | 248 | 278 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 249 | 272 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MEEVDDIKKP IFRDIRRYFC DYCGICRSKK SLVAAHMLTH HKEEVNKARS DGDGDAGGLK 60 ASNTCPECGV SFKKPAYLKQ HLQSHSLERP YRCSVEGCHS SYRRKDHLTR HLLQHQGKLF 120 RCPIENCNRE FAIQGNVKRH GRQLHDEDRP STTQKQYVCQ EIGCGKVFRF ASRLQKHLDS 180 HVKLDSVEAF CSEPGCMKPF TNEQCLKAHL QSCHQHITCE ICGTKQLRKN IKRHLRAHDT 240 KDSTERVKCN YKGCDHTFSN KSNLQQHVRA VHLKKKPFVW GFSGCSIRFS YKHLRENHEK 300 TGAHVCIHVS LILGSEDIIR HQILENEFMH GEWYFPIKRE ILERRMSSSV QGQEVDGRGS 360 T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tf6_A | 2e-15 | 67 | 209 | 19 | 155 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
1tf6_D | 2e-15 | 67 | 209 | 19 | 155 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015899747.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024935382.1 | 0.0 | LOW QUALITY PROTEIN: transcription factor IIIA-like | ||||
Swissprot | Q84MZ4 | 1e-122 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A2P5EHL1 | 1e-160 | A0A2P5EHL1_TREOI; TFIIH C1-like domain containing protein | ||||
STRING | XP_008219031.1 | 1e-155 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3069 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-125 | transcription factor IIIA |