PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015899024.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 302aa MW: 32932.6 Da PI: 5.4414

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015899024.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.7	9.8e-09	212	259	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq XP_015899024.1 212 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 259 8*************************9....888999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-15	206	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.16E-8	206	263	No hit	No description
PROSITE profile	PS50888	14.519	208	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.6E-15	208	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-6	212	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-8	214	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
METGAGALPG STPAAVAATE HEEPGLDSLQ FREEIQRLIT VPPENASSFT ALLELPATQA 60 MELLDHTLDS EGTPTPTTLS GEQVQKPYLH PPFNSSNLTF PSNPALIERA AMFSVFAGEN 120 SPETSSVPSN SSANLEKVKN EPVETDSNPN SFQHLSSDPT VENKNQRPSA KRKEREKKAK 180 GSTKKSKNEN SEDAEKLPYV HVRARRGQAT DSHSLAERAR REKINARMKL LQELVPGCNK 240 ISGTALVLDE IINHVQSLQR QVEFLSMRLA AVNPRIDFNL DSVLSTELSE GEFLSHASAA 300 NS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015899024.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015899023.1	0.0	transcription factor bHLH48
Swissprot	Q8VZ02	2e-89	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A2P5F1I9	1e-131	A0A2P5F1I9_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_004136583.1	1e-130	(Cucumis sativus)
STRING	XP_004161487.1	1e-130	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.1	5e-84	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]