PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898971.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 270aa    MW: 29725 Da    PI: 8.9116
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898971.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004204226223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp Cg  Fs+  +L+ H  + H
  XP_015898971.1 204 ECPQCGAKFSSVTTLVEHVEKvH 226
                     5*****************99888 PP
2zf-C2H216.81.9e-05242264223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp+C++ F+++ +L+ H  + H
  XP_015898971.1 242 VCPKCSRGFRDPVSLVEHVERdH 264
                     7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1110.105.3E-1168130IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.96E-870121No hitNo description
SMARTSM0035522076106IPR015880Zinc finger, C2H2-like
PfamPF014281.2E-778118IPR000058Zinc finger, AN1-type
SMARTSM003550.019203226IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.515203226IPR007087Zinc finger, C2H2
PfamPF138945.8E-4204226No hitNo description
PROSITE patternPS000280205226IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-4207226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.8241264IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85241269IPR007087Zinc finger, C2H2
PROSITE patternPS000280243264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MYVMSAEKGL VFCLEHRSYI KHSCPKADKQ DVTVVICPLC AKGVRLIPDE DPNITWERHV  60
NTDCDPSNYE KVTKKKKCPV PGCKDILTFS NTIKCRDCLV DHCLKHRFGP DHKCPGPKKP  120
EPSFPFMGLL SRSKKEDPKS NRAPLTASSP KWATSFLNAA SSVRASAEAS VTKLSNEISE  180
KWQIARDGMA QSSSSGSRNG QKEECPQCGA KFSSVTTLVE HVEKVHERGG NRAGGKKVTI  240
DVCPKCSRGF RDPVSLVEHV ERDHGGTSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898971.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024922676.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like, partial
SwissprotQ8VZ421e-113SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLW9RRL31e-167W9RRL3_9ROSA; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
STRINGXP_010102532.11e-167(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-111C2H2 family protein