PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898414.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 311aa    MW: 33862.2 Da    PI: 4.6149
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898414.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-1890140155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  XP_015898414.1  90 PVYRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 140
                     68*****998.**********854...59**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-1290140IPR001471AP2/ERF domain
PROSITE profilePS5103223.0991148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3191149IPR001471AP2/ERF domain
SMARTSM003801.3E-3591154IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-2191149IPR016177DNA-binding domain
CDDcd000183.27E-3192150No hitNo description
PRINTSPR003675.8E-1092103IPR001471AP2/ERF domain
PRINTSPR003675.8E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MKMLPTEAPI SPMADPPNSE AESSANSFSS SQSPSPSSPS SSSGLSPCLP KSSVSNILPN  60
QKQGKQQGSF PDEEDRKRVK RGRDNNSRHP VYRGVRMRTW GKWVSEIREP RKKNRIWLGT  120
FSTPEMAARA HDVAALSIKG SSAILNFPEL AALLPRPASN SPRDVQTAAA KAASMEVFNP  180
TTTSTSTSTS SSSSSLSQSS SSSSLATISS WSNDVSCSTP EELSEIVELP SLGTSYESAV  240
EAAAGNEFVF PADESVEEGW LYKYYNDQQQ SFEEEDYYYY GCFRDQISMI DETECGIGIP  300
SSAFDSLLWQ H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1982149573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898414.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898414.10.0dehydration-responsive element-binding protein 3
SwissprotQ9LYD32e-61DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2P5CMI37e-83A0A2P5CMI3_PARAD; AP2/ERF domain containing protein
STRINGEMJ036635e-78(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.19e-61ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]