PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015898404.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | TCP | ||||||||
Protein Properties | Length: 218aa MW: 23419.2 Da PI: 8.7909 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.2 | 1.5e-34 | 59 | 156 | 4 | 83 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec..eaessss 80 + +++ ++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tg+ s+s++ c ++ ss+s XP_015898404.1 59 ASSSSRDRHTKVNGRGRRVRMPAMCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGSgtlpaapvstpspamaSTSASVTCrvQPISSVS 153 456788********************************************************666666555444444333333333444444444 PP TCP 81 sas 83 s++ XP_015898404.1 154 SGQ 156 444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.9E-29 | 62 | 164 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.885 | 63 | 117 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MALHKFSSSD HHNNQSHHQT ERTTTAVIPT ATTTTTTTTT TTAITEPSSK TQLSLPRKAS 60 SSSRDRHTKV NGRGRRVRMP AMCAARIFQL TRELGHRSDG ETIEWLLRHA EPSIIAATGS 120 GTLPAAPVST PSPAMASTSA SVTCRVQPIS SVSSGQCLFS VGPPQAAPSC RLDLCQPVGL 180 EYAAASNGYR HMPFTALLLQ TSTSEADERQ QEEALREH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015898404.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015898404.1 | 1e-158 | transcription factor TCP11-like | ||||
Swissprot | Q9SJK7 | 2e-43 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A0A0KH86 | 5e-73 | A0A0A0KH86_CUCSA; Uncharacterized protein | ||||
STRING | XP_004156285.1 | 1e-74 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 3e-44 | TCP family protein |