PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G37000.1 | ||||||||
Common Name | T1J8.18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TCP | ||||||||
Protein Properties | Length: 188aa MW: 20682.1 Da PI: 7.0301 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108.1 | 1.4e-33 | 41 | 136 | 6 | 105 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssasnsssgk 89 r++++hTkv+gR RRv ++a+ aar+F+L++eLG+++ ++tieWLl qa+p+i+++tg + sss++ AT2G37000.1 41 ARTKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATGYgtklisnwvdvaadD------------------SSSSS 120 69**********************************************************655555555444321..................11112 PP TCP 90 aaksaakskksqksaa 105 +++s +++ ++++s++ AT2G37000.1 121 SMTSPQTQTQTPQSPS 136 2222223333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-28 | 42 | 130 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 24.446 | 43 | 97 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MIFQNVCRNE SNFNAIASES RSQTQFGVSK SSSSGGGCIS ARTKDRHTKV NGRSRRVTMP 60 ALAAARIFQL TRELGHKTEG ETIEWLLSQA EPSIIAATGY GTKLISNWVD VAADDSSSSS 120 SMTSPQTQTQ TPQSPSCRLD LCQPIGIQYP VNGYSHMPFT AMLLEPMTTT AESEVEIAEE 180 EERRRRHH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.37479 | 0.0 | silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145360694 | 0.0 | ||||
Genevisible | 263888_at | 0.0 | ||||
Expression Atlas | AT2G37000 | - | ||||
AtGenExpress | AT2G37000 | - | ||||
ATTED-II | AT2G37000 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G37000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT2G46830, AT3G15030, AT3G02150, AT3G27010, AT3G47620, AT4G18390, AT4G27330, AT5G08070, AT5G08330, AT5G51910, AT5G60970, AT1G01060, AT1G30210, AT1G35560, AT1G53230, AT1G58100, AT1G69690 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G37000 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006922 | 0.0 | AC006922.7 Arabidopsis thaliana chromosome 2 clone T1J8 map g6825, complete sequence. | |||
GenBank | BT010700 | 0.0 | BT010700.1 Arabidopsis thaliana At2g37000 mRNA, complete cds. | |||
GenBank | BT011504 | 0.0 | BT011504.1 Arabidopsis thaliana At2g37000 mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_181237.1 | 1e-139 | TCP family transcription factor | ||||
Swissprot | Q9SJK7 | 1e-140 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A178VXU1 | 1e-137 | A0A178VXU1_ARATH; Uncharacterized protein | ||||
STRING | AT2G37000.1 | 1e-139 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15265 | 16 | 18 | Representative plant | OGRP922 | 14 | 59 |
Link Out ? help Back to Top | |
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Phytozome | AT2G37000.1 |
Entrez Gene | 818274 |
iHOP | AT2G37000 |
wikigenes | AT2G37000 |