PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015897558.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 819aa    MW: 90471.2 Da    PI: 5.2643
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015897558.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.3e-2087142156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  XP_015897558.1  87 KKRYHRHTARQIQEMESLFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 142
                     688899***********************************************998 PP
2START156.71.9e-492915173206
                     HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
           START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                     a + ++el+k+ ++++p+W +    eng evl  +e ++              +++ea+r+s+vv+m++ +lv  +ld + +W   ++    +a+
  XP_015897558.1 291 AMSSMDELIKMCQSSQPLWIRNN--ENGREVLNLEEHARMfpwplnlkqhsseFRTEASRDSAVVIMNSITLVDAFLDAN-KWMDLFPsivcRAK 382
                     66789****************99..**********99888****************************************.************** PP

                     EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEE CS
           START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtw 166
                     t++viss+      g lqlm aelq+ splvp R+  f+Ry++q  ++g+w+ivd  +ds  + +   ss+ R +++pSg++i++++ng+s+vtw
  XP_015897558.1 383 TVQVISSDasgqanGSLQLMCAELQVVSPLVPtREAHFLRYCQQnAEEGSWAIVDFPIDSFHESNIqPSSFPRYRRRPSGCVIQDMPNGYSRVTW 477
                     ***********************************************************99998888999************************* PP

                     EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     veh + +++ +h+ + +lv sg+a+ga +w+a lqrqce+
  XP_015897558.1 478 VEHGEIEEKPIHQTFSHLVYSGMAFGAHRWLAVLQRQCER 517
                     **************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.09E-1974145IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-2081149IPR009057Homeodomain-like
PROSITE profilePS5007117.03884144IPR001356Homeobox domain
SMARTSM003895.4E-1985148IPR001356Homeobox domain
PfamPF000461.2E-1787142IPR001356Homeobox domain
CDDcd000862.25E-1887145No hitNo description
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PROSITE profilePS5084844.966280520IPR002913START domain
SuperFamilySSF559616.73E-31281519No hitNo description
CDDcd088754.49E-118284516No hitNo description
SMARTSM002348.8E-31289517IPR002913START domain
PfamPF018521.2E-41291517IPR002913START domain
SuperFamilySSF559615.77E-18544713No hitNo description
SuperFamilySSF559615.77E-18748787No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    Send to blast
MYGDCQVMST MGGNVPSDTL FSSPIQNPNF NFMSTMPFQS FSASIIPKEE NGLLKGKEEI  60
MESGSGSEQL EEKSGNEQES EQQPPKKKRY HRHTARQIQE MESLFKECPH PDDKQRLKLS  120
QELGLKPRQV KFWFQNRRTQ MKAQQDRSDN VILRAENESL KNENYRLQAA LRNVICPNCG  180
GPAMVGDIGL DEQQLRLENA RLREELDQVC CLTSRYTGRA IQPMTPAAAP PLMPPSLDLD  240
MDIYSRHFSD PMGSCSDMVP VPMLPPEANS HFPETTGQLM EEEKSLALDL AMSSMDELIK  300
MCQSSQPLWI RNNENGREVL NLEEHARMFP WPLNLKQHSS EFRTEASRDS AVVIMNSITL  360
VDAFLDANKW MDLFPSIVCR AKTVQVISSD ASGQANGSLQ LMCAELQVVS PLVPTREAHF  420
LRYCQQNAEE GSWAIVDFPI DSFHESNIQP SSFPRYRRRP SGCVIQDMPN GYSRVTWVEH  480
GEIEEKPIHQ TFSHLVYSGM AFGAHRWLAV LQRQCERVAS LMARNISDLG VIPSPEARRN  540
LMKLAQRMIR TFCVNMSTSS NQSWTALSDS PEDTVRITTR KVTEPGQPNG VIPSAVSTTW  600
LPYSHYQVFD LLRDERRRSQ LDVLSNGNSL HEVAHIANGS HPGNCISLLR INVASNSSQH  660
VELMLQESCT DQSGSLVVYT TIDVDAIQLA MSGEDPSCIP LLPLGFVIVP VESTSVTTTP  720
TTTATMATDG SSVPSSEDAT GSAATVSSSC LLTVGLQVLA STIPSAKLNL SSVNAINNHL  780
CNTVQQIISA LGSTSTTCTD NGSVGGSCTD PNSAPPPPK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015897558.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897558.10.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein ROC3-like
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A2N9GWN30.0A0A2N9GWN3_FAGSY; Uncharacterized protein
STRINGEMJ110500.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7