PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015897441.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 366aa    MW: 41089.3 Da    PI: 5.5818
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015897441.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-1872127355
             AP2   3 ykGVrwdkkrgrWvAeIrdpseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr++  +g+WvAeIr+p + +   ++  r +lg+f ta eAa a+++a+k+++g
  XP_015897441.1  72 YRGVRQRT-WGKWVAEIREPIDKNigsRKgSRLWLGTFSTALEAALAYDEAAKAIYG 127
                     9****999.**********87745577446***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.99E-1971135IPR016177DNA-binding domain
PROSITE profilePS5103222.16871135IPR001471AP2/ERF domain
SMARTSM003802.4E-3271141IPR001471AP2/ERF domain
PfamPF008471.6E-1272127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-2872135IPR001471AP2/ERF domain
PRINTSPR003671.1E-97283IPR001471AP2/ERF domain
CDDcd000187.73E-2972135No hitNo description
PRINTSPR003671.1E-9101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSETLDGNKK SRKRRNGNDS VVDTLEKWKL YNDQLVPEAK DGVKSNPKSP AKGSKKGCMK  60
GKGGPENSDH YYRGVRQRTW GKWVAEIREP IDKNIGSRKG SRLWLGTFST ALEAALAYDE  120
AAKAIYGSAA RLNFPGYPIH SSKASSSIRT KTVPAESQTT TSNSSETESF TEELKMNHYQ  180
SESDCLAKKP TLEVDSNKRE DYSPANHVKI ELEDVYCRGF NMDAERLKPC KGVGFEKPVK  240
REEMEEDVAK TLNSNSSHSL SDSYTSSDVQ DKVKDSCRFG SSDSNPGCLP NWATDETFKI  300
DFWDRQWGKQ SNGSSQIQRP NANESECGSL YNLEEPYLDF DCSLDFLRPG YDFGFSEDQG  360
TLNLWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1871135260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015897441.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897441.10.0dehydration-responsive element-binding protein 2B-like
STRINGXP_009373085.19e-53(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132862127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11020.12e-24DRE/CRT-binding protein 2B