PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015897412.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 526aa MW: 60128.9 Da PI: 4.5228

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015897412.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	145.6	5e-45	156	524	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lL + ea+++++ ela+ lL +s+ +sp g++++Rla+ L++ + + +++s ++ a+k+f++++P+ kf+++ XP_015897412.1 156 KHLLQAYGEAMEKNQRELAEVLLRCISDKVSPLGEAFERLAFN----LSKEAEE------QGNYLKQAS---LKNFDDAYKAFNQIFPYEKFAYF 237 68899999*******************************97....5555555......222234444...66677899*********** PP GRAS 97 taNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakr 185 taN+aIlea+ g+ e++HiiDfd+ +GlQW+ +++a a+R++g l++T ++ e++ ++ eet+++L + A+++g+++e + + r XP_015897412.1 238 TANSAILEALPGDaETIHIIDFDL-EGLQWAQMIEAAAQRQKG---LKLTSIKMDEEEadfapQQWGFEETKRKLLDHAKTFGLKLEVKEV---R 325 ********989****8.7**********999...***9988778999999*********************98...7 PP GRAS 186 ledleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk..........vvvvveqe.adh..nsesFlerfleale 262 +edl ++e++ + +E la n++ +l ++ +v ++++ e+L++ k+l ++ ++++ + + ++ n +sF f +le XP_015897412.1 326 IEDL-VNEIKRTKkrgggREFLAFNCMAELPHMR--RVRSRKHVMEFLRVAKDLLSNsanckssyrgIIILGDGDpCEKlsNCSSFSPFFNGCLE 417 8888.55554333377889**********7..788888899**999665444555566689999998866557999******* PP GRAS 263 yysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.ees 355 +y al++s+e+++p e+r+ +E ++ + i++ ++ + e +e + + +G++ +ls++ ++ak +lr+ s ++e ++ XP_015897412.1 418 HYQALLESMESSFPIRLaEARMAMECLFIWPYISSQAWYQKWK--EIKEGF----HLQAGFGLEGWRLSKESLMEAKEMLREETSYRVKIEgQNG 506 **********776699***9999999987777776..555555....34556888999************9955566665556 PP GRAS 356 gslvlgWkdrpLvsvSaW 373 +++ l W d pLv vS W XP_015897412.1 507 NEMSLEWGDIPLVRVSTW 524 6777************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	23.793	129	504	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-42	156	524	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MMQPELVQPS SWPLYNVADS PFDNLGQYYN LTMDSHDDDF EFSSLYTTIE SYSELSQNPF 60 SSMFSGEPVQ IAVCDDPLKG MSPMEDLSLS GEIEGIWEES VGSFPSHQFS NSIEINDLWS 120 PSSSMKSESR TDVTSIQRSL TLPGENMEIE NELSVKHLLQ AYGEAMEKNQ RELAEVLLRC 180 ISDKVSPLGE AFERLAFNLS KEAEEQGNYL KQASLKNFDD AYKAFNQIFP YEKFAYFTAN 240 SAILEALPGD AETIHIIDFD LEGLQWAQMI EAAAQRQKGL KLTSIKMDEE EADFAPQQWG 300 FEETKRKLLD HAKTFGLKLE VKEVRIEDLV NEIKRTKKRG GGREFLAFNC MAELPHMRRV 360 RSRKHVMEFL RVAKDLLSNS ANCKSSYRGI IILGDGDPCE KLSNCSSFSP FFNGCLEHYQ 420 ALLESMESSF PIRLAEARMA MECLFIWPYI SSQAWYQKWK EIKEGFHLQA GFGLEGWRLS 480 KESLMEAKEM LREETSYRVK IEGQNGNEMS LEWGDIPLVR VSTWIN

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MMQPELVQPS SWPLYNVADS PFDNLGQYYN LTMDSHDDDF EFSSLYTTIE SYSELSQNPF  60
SSMFSGEPVQ IAVCDDPLKG MSPMEDLSLS GEIEGIWEES VGSFPSHQFS NSIEINDLWS  120
PSSSMKSESR TDVTSIQRSL TLPGENMEIE NELSVKHLLQ AYGEAMEKNQ RELAEVLLRC  180
ISDKVSPLGE AFERLAFNLS KEAEEQGNYL KQASLKNFDD AYKAFNQIFP YEKFAYFTAN  240
SAILEALPGD AETIHIIDFD LEGLQWAQMI EAAAQRQKGL KLTSIKMDEE EADFAPQQWG  300
FEETKRKLLD HAKTFGLKLE VKEVRIEDLV NEIKRTKKRG GGREFLAFNC MAELPHMRRV  360
RSRKHVMEFL RVAKDLLSNS ANCKSSYRGI IILGDGDPCE KLSNCSSFSP FFNGCLEHYQ  420
ALLESMESSF PIRLAEARMA MECLFIWPYI SSQAWYQKWK EIKEGFHLQA GFGLEGWRLS  480
KESLMEAKEM LREETSYRVK IEGQNGNEMS LEWGDIPLVR VSTWIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-16	222	427	80	270	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015897412.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015897412.1	0.0	nodulation-signaling pathway 2 protein-like
TrEMBL	A0A2P5F978	0.0	A0A2P5F978_TREOI; GRAS transcription factor
STRING	XP_010093554.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4274	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	6e-20	GRAS family protein