PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015897327.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 507aa    MW: 56363.6 Da    PI: 6.6643
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015897327.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.52.3e-201577163
        trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykk 63
                    +W+++e+++Li++r e+e+++  +k+ k+lWe+vs+++++rgf+r++ qCk+kw+n+ +rykk
  XP_015897327.1 15 QWSQEETKELIRIRAELERDSTVAKRGKTLWEAVSSRLSARGFTRTADQCKCKWKNILNRYKK 77
                    7*************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.9E-41274IPR001005SANT/Myb domain
SuperFamilySSF466891.62E-51377IPR009057Homeodomain-like
PfamPF138371.8E-151478No hitNo description
CDDcd122031.10E-241577No hitNo description
Gene3DG3DSA:1.10.10.606.9E-71573IPR009057Homeodomain-like
PROSITE profilePS500908.6181672IPR017877Myb-like domain
SuperFamilySSF561129.05E-76206489IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.201.6E-17220305No hitNo description
SMARTSM002201.2E-32222494IPR000719Protein kinase domain
PROSITE profilePS5001138.591222494IPR000719Protein kinase domain
PfamPF000691.1E-46224487IPR000719Protein kinase domain
PROSITE patternPS001070228254IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.101.9E-45306491No hitNo description
PROSITE patternPS001080341353IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0009664Biological Processplant-type cell wall organization
GO:0009826Biological Processunidimensional cell growth
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MAAASAQAQG QLQVQWSQEE TKELIRIRAE LERDSTVAKR GKTLWEAVSS RLSARGFTRT  60
ADQCKCKWKN ILNRYKKFLM KREIFEVIFQ LGFDLQLKMN VGLFWDAILF GGNRGLCGMQ  120
INVTCKNESG GPSMNPSSPN SGQNQSGKKK YSGRLLISAS ATVGALLLVA LMCFWGCFLY  180
KKLGKHDSSG LAMDVSGGAS IVMFHGDLPY SSKDIIKKLE TLNDEHIIGC GGFGTVYKLA  240
MDDGCVFALK RIIKLNEGFD RFFERELEIL GSIKHRYLVN LRGYCNSPTS KLLIYDFLPG  300
GSLDEALHER SEQLDWDARL NIIMGAAKGL AYLHHDCSPR IIHRDIKSSN ILLDGNLEAR  360
VSDFGLAKLL EDEESHITTI VAGTFGYLAP EYMQSGRATE KTDVYSFGVL VLEVLSGKRP  420
TDASFIEKGL NIVGWLNFLV SENRQREIVD PQCEGVQSES LDALLSVAIQ CVSSSPEDRP  480
TMHRVVQLLE SEVMTPCPSD FYDSNSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3uim_A7e-7521049220309BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3ulz_A7e-7521049220309BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the signaling pathway that regulates cell wall function, including cellulose biosynthesis, likely via an 1-aminocyclopropane-1-carboxylic acid (ACC)-mediated signal (a precursor of ethylene). {ECO:0000269|PubMed:19017745}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015897327.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024934573.10.0LRR receptor-like serine/threonine-protein kinase FEI 1
SwissprotC0LGF40.0FEI1_ARATH; LRR receptor-like serine/threonine-protein kinase FEI 1
TrEMBLB9S1N00.0B9S1N0_RICCO; BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative
STRINGXP_002519895.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.23e-16WRKY family protein
Publications ? help Back to Top
  1. Xu SL,Rahman A,Baskin TI,Kieber JJ
    Two leucine-rich repeat receptor kinases mediate signaling, linking cell wall biosynthesis and ACC synthase in Arabidopsis.
    Plant Cell, 2008. 20(11): p. 3065-79
    [PMID:19017745]
  2. Gou X, et al.
    Genome-wide cloning and sequence analysis of leucine-rich repeat receptor-like protein kinase genes in Arabidopsis thaliana.
    BMC Genomics, 2010. 11: p. 19
    [PMID:20064227]
  3. Basu D, et al.
    Glycosylation of a Fasciclin-Like Arabinogalactan-Protein (SOS5) Mediates Root Growth and Seed Mucilage Adherence via a Cell Wall Receptor-Like Kinase (FEI1/FEI2) Pathway in Arabidopsis.
    PLoS ONE, 2016. 11(1): p. e0145092
    [PMID:26731606]