PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896823.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 272aa    MW: 28978.8 Da    PI: 6.5006
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.0001483105123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C + F++   L  H+++H
  XP_015896823.1  83 YTCTFCRREFRSAQALGGHMNVH 105
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.19E-680110No hitNo description
PfamPF139122.1E-583106IPR007087Zinc finger, C2H2
SMARTSM003550.006683105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15783110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAAELGLLPL THLNKLPKSQ DNNIQNQDHH HHQLNPSLIP SSAWMWNPKQ THHQQEEDDS  60
WEVRAFAEDT GNIMGTTWPP RSYTCTFCRR EFRSAQALGG HMNVHRRDRA RLHQVQPNSI  120
NPAGSSSSSS SSASSFLIPT QEFVANGSGL CLLYQFPNPG GGGGGGGGGG GGNGGVGGVF  180
HSATLNACTD SSSSSPSTIL SISPYPPGNL LATYSPPVNF PVRHLPEITT NASDHCPSNR  240
ADQQPLASSS TENGNEEIDL ELRLGHGPTP TC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A7e-1378105229superman protein
2l1o_A7e-1378105229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896823.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896823.10.0uncharacterized protein LOC107430492
TrEMBLA0A2I4DWF22e-85A0A2I4DWF2_JUGRE; transcriptional regulator SUPERMAN-like
STRINGPOPTR_0001s02530.11e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-36C2H2 family protein