PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896698.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 355aa    MW: 39800.5 Da    PI: 7.9354
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896698.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20202252255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+ta eAaka+++a+ +l+g
  XP_015896698.1 202 HYRGVRQRP-WGKFAAEIRDP---NrKGSRVWLGTFDTAIEAAKAYDRAAFRLRG 252
                     8********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.93E-32201260No hitNo description
Gene3DG3DSA:3.30.730.101.5E-32201261IPR001471AP2/ERF domain
PfamPF008471.9E-14202252IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22202261IPR016177DNA-binding domain
SMARTSM003804.5E-38202266IPR001471AP2/ERF domain
PROSITE profilePS5103224.25202260IPR001471AP2/ERF domain
PRINTSPR003671.9E-13203214IPR001471AP2/ERF domain
PRINTSPR003671.9E-13242262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSMANLDEVS ALETIKQYLL GEFSPVNTYS AILDDWSTYA HNAEFSSSRS DSLCSKSSSS  60
DSNIGISDCC LNSSELFEFD WRNHPNVFME FESKPALVDL TTPKSFQNSS NSNSQSSSNS  120
FEFELKPQII ASNPQSNSNN TFEFQPNSQN SATKPSNSSP QSNRKPSLTI SLPEKTKWIQ  180
FAAPNPTLPV AQQSVQKEGK KHYRGVRQRP WGKFAAEIRD PNRKGSRVWL GTFDTAIEAA  240
KAYDRAAFRL RGSKAILNFP LEAGKSDCVK NVEKKRRRQE EEEKVVAEET KPVVVVKKER  300
LTERDETVNY LKDIPLTPSS WNTIWDSDVK GVFNVPPLSP LSPLPPFGFP QLMVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-31201261161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896698.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896698.10.0ethylene-responsive transcription factor 5-like
TrEMBLA0A2P5CVM21e-124A0A2P5CVM2_TREOI; AP2/ERF transcription factor
STRINGXP_008238414.11e-102(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.17e-58ethylene responsive element binding factor 6