PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896515.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TALE
Protein Properties Length: 721aa    MW: 80467.5 Da    PI: 7.0211
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896515.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.89.1e-094685051954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  XP_015896515.1 468 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 505
                     554458******************************88 PP
2BELL120.29.4e-39329400172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e++elqk+k+kLls+leeV++rYk+y++q+++v+ssFeavag g+a++Y +lA+ka+SrhFrcLkd i++qi
  XP_015896515.1 329 EFMELQKRKTKLLSMLEEVERRYKHYCDQMKAVVSSFEAVAGSGAATVYSALASKAMSRHFRCLKDGIVNQI 400
                     679********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-59259398IPR006563POX domain
PfamPF075261.2E-48265396IPR006563POX domain
PROSITE profilePS5007112.212446509IPR001356Homeobox domain
CDDcd000864.75E-11449510No hitNo description
SMARTSM003897.7E-9449513IPR001356Homeobox domain
SuperFamilySSF466894.11E-17450516IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-27452515IPR009057Homeodomain-like
PfamPF059209.9E-18466505IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MMAAREVCEE KSGFCYSDVS SSNPNIHETQ FTNQIQGFVS SNPEMFNLTT GMEMIGFSKN  60
LQQQQSSTTT SDNNNNTNNN NNNNTAAAAA IWKGFFANKS GNTTVGPSSS KSDFYHHQFN  120
IKQQQHHDFT ATGISETTTS DQNLMETSAG AAATWEQQNR FLVDDDSSLR CVFPCEGNER  180
PSQGLSLSLS STDPSTIGLQ SFELRHTAAA STSNNHHHHN QDVFFAKSSS PNLHQIQASN  240
HHHHFQQQLH GGSVHPHPHH NHFHLRNSKY LVPAQELLNE FCSLGIKQTD LMQKQKQQIK  300
NKQWEEDNDN GNNNGGGSSS RKQSLYSVEF MELQKRKTKL LSMLEEVERR YKHYCDQMKA  360
VVSSFEAVAG SGAATVYSAL ASKAMSRHFR CLKDGIVNQI QATRKAMGEK DPVAPGTTRG  420
ETPRLRVLDQ TLRQHRAFQQ MSMMESHPWR PQRGLPERSV SVLRSWLFEH FLHPYPSDVD  480
KHILARQTGL SRSQVSNWFI NARVRLWKPM IEEMYTEETK EHDISNNNNM AISSDGFTMD  540
LGDNGRHNHR NNPPSTSTRP EDQKPTPDQL VRIDSECLSS IITNTDKNDS ARSSKTFQNH  600
HIQNFGRVSD SFGTMELDFS SYNHHSNGGT LSFGNENPNH SFNGGVGGGG GGGVSLTLGL  660
QQHGGSGVSL AFSPASQSSL FYPRDHIDEC QPVQYSLLDG EAQNLLYRNL MGAQLLHDLA  720
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-15455513563Homeobox protein Meis2
3k2a_B4e-15455513563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896515.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896515.10.0homeobox protein BEL1 homolog
SwissprotQ388971e-150BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A2I4H8R60.0A0A2I4H8R6_JUGRE; homeobox protein BEL1 homolog
TrEMBLM5WCS40.0M5WCS4_PRUPE; Uncharacterized protein
STRINGEMJ115240.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46502030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-142TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]