PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015896472.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | AP2 | ||||||||
Protein Properties | Length: 495aa MW: 53860.8 Da PI: 7.3527 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.3 | 5.1e-15 | 218 | 269 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_015896472.1 218 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 269 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR00367 | 2.0E-6 | 149 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-18 | 218 | 279 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.42E-25 | 218 | 279 | No hit | No description |
Pfam | PF00847 | 6.3E-10 | 218 | 269 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-18 | 219 | 278 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 219 | 277 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 219 | 283 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-6 | 259 | 279 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MDSSSSSSPQ NWLAFSLSNY PHLHSHPQHH HLSLFEVFTS SNPEREKLED FLGGCGGGGG 60 STTTATTTSA ATPSLTQFST ETTAIAALPD SSEIYDSELK TIAASFLRGY SSSSSNEHTE 120 TGRNQLPVVP VEPTSKKTVD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQSRKGR 180 QVYLDFVYCL SEYYSTHECI IIPLILYRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA 240 GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKSIASSN LPIGGMSGKS 300 KNSSESISDS KSIDGSRSAT DDRDGLSSAS SVTFATQPTS STLSFAIPIK QDPSDYWSNI 360 FGFHNSAKSN PSIAPTLFHN VNTSSSSVPF NMDFSAESNN GFFNTSGTTG YATTTSTTTT 420 QQHQHQQQQQ QQSSVSVSGS SGGSTVAAFS TQIALNSNNG YETSSGYGSW IGPTLHTFQT 480 HAKPNLFQTP IFGME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015896472.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015896472.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-111 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A251QUH0 | 1e-177 | A0A251QUH0_PRUPE; Uncharacterized protein | ||||
STRING | EMJ26826 | 1e-176 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12562 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 5e-97 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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