PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896127.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 634aa    MW: 72159.9 Da    PI: 8.3758
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896127.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-07355421348
                      SS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksrwqkyl 48 
                      r ++ Ed+ +++av+++ ++                      +Wk Ia+ ++  Rt +++ +r +++l
   XP_015896127.1 355 RYSPKEDKMILKAVNKYIKEhglgddgkdiilhckkrpevrgCWKDIAAALP-WRTHESVYHRARNLL 421
                      889**************999********************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.0E-8352423IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-10355442IPR009057Homeodomain-like
PfamPF002491.2E-5355421IPR001005SANT/Myb domain
PROSITE profilePS500905.541355421IPR017877Myb-like domain
SuperFamilySSF466891.12E-9401482IPR009057Homeodomain-like
SMARTSM007170.13425472IPR001005SANT/Myb domain
PROSITE profilePS500905.657428470IPR017877Myb-like domain
PfamPF139211.6E-9429487No hitNo description
Gene3DG3DSA:1.10.10.605.5E-7443480IPR009057Homeodomain-like
PROSITE profilePS500907.747471539IPR017877Myb-like domain
SMARTSM007173475541IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-7481539IPR009057Homeodomain-like
SuperFamilySSF466891.41E-5519601IPR009057Homeodomain-like
PROSITE profilePS500907.608541594IPR017877Myb-like domain
SMARTSM0071749545596IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MGGDGVKQSK EKKKKHKDKK KDGVNGVSAL NGYFEDNTMD ELVERQRDTS KTNGKEGGAN  60
MNKKRKREKV GDIVVKNDVT NGVKLTKERN HSPGKIREEL MLVRKENSDE ILEDNKMSEV  120
SEGQNSYECW DIAEMNNEEE RGKRNRKKRK KEKLDGDLAG GLKSDGIEME KSDERITKKS  180
EFAHKEKKKT KKKYQENDSA AGLQDAVAEK LDDENFGIQD GRNVENEVNV GLIQSCIADV  240
VNAEDGYKAK KAKSDKHGSK DKKNNFKGDK QVSDGSVCKG KKKTKNGVGM STISENAALE  300
GSSKRVTFAE NVEVFSSCNS PRGGNDAENV EFSSSSDSSG DETDYNGDVL IQGKRYSPKE  360
DKMILKAVNK YIKEHGLGDD GKDIILHCKK RPEVRGCWKD IAAALPWRTH ESVYHRARNL  420
LERGEDRKWT AEEIELIQRF HEKHGPNWRM LADALNKHRI HVKDTFRRIK PANLKKGQWS  480
QEEYQNLFDL VNMDLRMRAF EERKSKHGML RDAISWEAIS EKLSTRNNAA CCVKWYSQLG  540
SPMAAEGIWN DTDDYRLVDA LSSLDATSME DVEWDELLEH RSGDLCRKRW NQMVKHIGEH  600
GNKSFADQVE VLTKRYCLDV LEAREVYNSK PIVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150KRNRKKRKK
2145151RKKRKKE
3145152RKKRKKEK
4146150KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896127.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896127.10.0RNA polymerase I termination factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-117MYB_related family protein