PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895915.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 329aa    MW: 36619.1 Da    PI: 8.0619
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895915.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-10173220455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i  ++  L++l+P +    +k   Ka iL + ++Y++sLq
  XP_015895915.1 173 SHSLAERARREKISVRMKLLQSLVPGC----DKITGKAHILDEIINYVQSLQ 220
                     8*************************9....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-15167236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.54E-9167224No hitNo description
PROSITE profilePS5088815.301169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15169231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-8173220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-9175225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSSSLEKQRV VVFSTTTTNT PNPPPNFSHE YLQGISLHLQ THETTGPHLE TLGLVPFSSI  60
SHTSKQINSG HSSPMLLHTE ARDHHHFYSS SLDRHKRRKK IKMVSHQEDR EGKRKKQSSR  120
KSGSTTEGMR KLKTTNEAKK KQNEGAAADD DRIQEAPTGF VRVRARRGQA TDSHSLAERA  180
RREKISVRMK LLQSLVPGCD KITGKAHILD EIINYVQSLQ KQVECLAAKL ASVDPMLSHD  240
FKLDPLITGT LTDDQGQCCL EPPLCGLQES SSTQFRCFAD NAPTSVSLVV SEDQRPTVVS  300
QDDGNLFFGL DDHSENIISQ CGFDNLCSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197115RKKIKMVSHQEDREGKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895915.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895915.10.0transcription factor bHLH137-like
RefseqXP_015902282.10.0transcription factor bHLH137-like
TrEMBLA0A0B5E9533e-54A0A0B5E953_CAPAN; Transcription factor Upa20
TrEMBLA0A251R1H12e-54A0A251R1H1_PRUPE; Uncharacterized protein
TrEMBLA0A2G3CXN14e-54A0A2G3CXN1_CAPCH; Transcription factor bHLH74
TrEMBLA8TLW54e-54A8TLW5_CAPAN; BHLH transcription factor Upa20
STRINGXP_008222403.15e-56(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1786056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-41bHLH family protein