PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015895446.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 502aa MW: 55267.5 Da PI: 6.9976

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015895446.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	457.5	8.3e-140	134	493	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv++L++cA+av++++l+ a+al++++ la +++ +m+++a yf+eALa+r++r +y p ++ + ++ s+ l+ f+e++P+lkf+h XP_015895446.1 134 LVHALMACADAVQQNNLNIAEALVKQIGYLAMSQAGAMRKVAMYFAEALARRIYR----IY---PENPLD-HSFSDILQ--MHFYETCPYLKFAH 218 689**************************************************....55...333332.23444443..45******** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +taNqaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+e+g++La++Ae+++v fe++ +va++l+dl+ XP_015895446.1 219 FTANQAILEAFQGKSRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAPDNSDHLQEVGWKLAQLAESIHVAFEYRGFVANSLADLD 313 ******************************************************************************************* PP GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++L+++p E++aVn+v++lh+ll++++++e+ vL++v++++P++v++veqea+hn++ F++rf e+l+yys+lfdsle ++ s++++ XP_015895446.1 314 ASMLELRPseVESVAVNSVFELHKLLARPGAIEK----VLSVVRQIKPEIVTMVEQEANHNGPVFMDRFNESLHYYSSLFDSLEGSV---SNQDK 401 ****88899*****************....********************************************7...999 PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++++lg++i n+vaceg er+erhe+l++Wr+rl++aGF++v+l+++a+kqa++ll+ ++ +dgyrvee++g+l+l W++rpL+++SaW+ XP_015895446.1 402 VMSEVYLGKQILNIVACEGLERVERHEKLNQWRNRLGSAGFSSVSLGSNAYKQASMLLALFAsGDGYRVEENNGCLMLSWHTRPLIATSAWQ 493 *******************************************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.47	108	472	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-137	134	493	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MANLRKVPGE VERDERRRQT GRENQSRSTC VFADASSSDY DLKAIPGKAI YGQKTTTATQ 60 LDSSSSSSRE TKRLKTSSGS TSSELFATTT SSSIAAPPPS LPPTYNNNST TVNGDSPSTR 120 PVVLVDSQEN GVRLVHALMA CADAVQQNNL NIAEALVKQI GYLAMSQAGA MRKVAMYFAE 180 ALARRIYRIY PENPLDHSFS DILQMHFYET CPYLKFAHFT ANQAILEAFQ GKSRVHVIDF 240 SMNQGMQWPA LMQALALRPG GPPAFRLTGI GPPAPDNSDH LQEVGWKLAQ LAESIHVAFE 300 YRGFVANSLA DLDASMLELR PSEVESVAVN SVFELHKLLA RPGAIEKVLS VVRQIKPEIV 360 TMVEQEANHN GPVFMDRFNE SLHYYSSLFD SLEGSVSNQD KVMSEVYLGK QILNIVACEG 420 LERVERHEKL NQWRNRLGSA GFSSVSLGSN AYKQASMLLA LFASGDGYRV EENNGCLMLS 480 WHTRPLIATS AWQLAAKPVT TH

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MANLRKVPGE VERDERRRQT GRENQSRSTC VFADASSSDY DLKAIPGKAI YGQKTTTATQ  60
LDSSSSSSRE TKRLKTSSGS TSSELFATTT SSSIAAPPPS LPPTYNNNST TVNGDSPSTR  120
PVVLVDSQEN GVRLVHALMA CADAVQQNNL NIAEALVKQI GYLAMSQAGA MRKVAMYFAE  180
ALARRIYRIY PENPLDHSFS DILQMHFYET CPYLKFAHFT ANQAILEAFQ GKSRVHVIDF  240
SMNQGMQWPA LMQALALRPG GPPAFRLTGI GPPAPDNSDH LQEVGWKLAQ LAESIHVAFE  300
YRGFVANSLA DLDASMLELR PSEVESVAVN SVFELHKLLA RPGAIEKVLS VVRQIKPEIV  360
TMVEQEANHN GPVFMDRFNE SLHYYSSLFD SLEGSVSNQD KVMSEVYLGK QILNIVACEG  420
LERVERHEKL NQWRNRLGSA GFSSVSLGSN AYKQASMLLA LFASGDGYRV EENNGCLMLS  480
WHTRPLIATS AWQLAAKPVT TH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	4e-69	129	492	13	377	Protein SCARECROW
5b3h_D	4e-69	129	492	13	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015895446.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024933753.1	0.0	DELLA protein GAIP-B-like
Swissprot	Q8S4W7	0.0	GAI1_VITVI; DELLA protein GAI1
TrEMBL	A0A2N9EU52	0.0	A0A2N9EU52_FAGSY; Uncharacterized protein
TrEMBL	A0A2P5EPB4	0.0	A0A2P5EPB4_TREOI; DELLA transcription factor
STRING	EOY01029	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF803	34	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	0.0	GRAS family protein