PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015894877.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 318aa MW: 36111.9 Da PI: 4.4857 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.2e-18 | 86 | 139 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa+ k XP_015894877.1 86 KKRRLTVDQVQFLERNFELENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFK 139 56689***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 129.2 | 1.7e-41 | 86 | 177 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrl+ +qv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy+ Lk+++d+lk++ ++L ke+e+L++e+++ XP_015894877.1 86 KKRRLTVDQVQFLERNFELENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYDLLKASCDKLKTDYDNLLKENENLKNEVNS 177 9**************************************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.27E-19 | 73 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.973 | 81 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-17 | 83 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.07E-16 | 84 | 142 | No hit | No description |
Pfam | PF00046 | 8.2E-16 | 86 | 139 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-19 | 88 | 148 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.8E-6 | 112 | 121 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 116 | 139 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.8E-6 | 121 | 137 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.9E-17 | 141 | 182 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MACGKIYGGS SDMTILLKDE RRPLASDVLE SLWISSSAPS FHDSKSIVNF ENVSGGDSTE 60 RSFFQRIDQE ENGDDDYDAC FHQPGKKRRL TVDQVQFLER NFELENKLEP ERKVQLAKEL 120 GLQPRQVAIW FQNRRARFKT KQLEKDYDLL KASCDKLKTD YDNLLKENEN LKNEVNSLKN 180 KLLTKEKGKE NLETQNAINS PNSEPQDPIQ NTASGNASNV PMVVCKQEDA SSAKSDVFDS 240 DSPHYAENHS SLLEPAGSSH VFEPDQSDFS QDEDDNLSKS LLPPLYFPKM ETSCYDDPPA 300 NSCNLGFSLE EQPFYFWP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 141 | RRARFKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015894877.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015894877.1 | 0.0 | homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q02283 | 3e-42 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A2N9EC56 | 1e-162 | A0A2N9EC56_FAGSY; Uncharacterized protein | ||||
STRING | XP_007157405.1 | 1e-144 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 4e-37 | homeobox protein 16 |
Publications ? help Back to Top | |||
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