PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894579.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 335aa    MW: 36606.3 Da    PI: 6.7302
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894579.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.14.3e-17230264135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  XP_015894579.1 230 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 264
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.3E-8218314IPR016679Transcription factor, GATA, plant
Gene3DG3DSA:3.30.50.103.3E-14224261IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.347224260IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-16224274IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-15225287No hitNo description
CDDcd002022.40E-12229276No hitNo description
PfamPF003208.2E-15230264IPR000679Zinc finger, GATA-type
PROSITE patternPS003440230255IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEVPQFFIGG CFGAGAGELS PNKRHSEQKP GEHFTIDDLL DFSNEDAMVT DGFFDNVAGT  60
STDSSTVTVV DSCNSSVCGG EPQLSGNRSF SESQFSGDLC VPYDDLAELE WLSNFVEDSF  120
SAEKDLQALQ FQTTTTTITK PQTPETSSSS ETIPSETTRN SNSPFFQPES PLPGKARSKR  180
SRAAPGDWST RLLHLITPSN DAKPVKTTTS KKREGSSNSS SNSDSSGRKC LHCAAEKTPQ  240
WRTGPMGPKT LCNACGVRYK SGRLVPEYRP AASPTFVSTK HSNSHRKVVE LRRQKDLQRA  300
QQQHFLSQSS IFGLSNGGDD FLIHGHNGHD FRHMI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015894579.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894579.10.0GATA transcription factor 9-like
TrEMBLA0A2P5BZX80.0A0A2P5BZX8_PARAD; GATA transcription factor
STRINGXP_010098128.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.15e-73GATA transcription factor 9