PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894578.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 253aa    MW: 27056.1 Da    PI: 4.484
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894578.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-1756104355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+ +++g
  XP_015894578.1  56 YRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFSNPEMAARAHDVAAISIKG 104
                     9****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.70855112IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-2155112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-3155113IPR001471AP2/ERF domain
SMARTSM003809.5E-3755118IPR001471AP2/ERF domain
CDDcd000189.89E-3356114No hitNo description
PRINTSPR003671.4E-95667IPR001471AP2/ERF domain
PfamPF008478.7E-1156104IPR001471AP2/ERF domain
PRINTSPR003671.4E-97894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSMELNNSEV ESCSNSSLSA SSPSPSPSAC ASASSLKTQL AGVSKRHKDG SRHPMYRGVR  60
MRNWGKWVSE IREPRKKSRI WLGTFSNPEM AARAHDVAAI SIKGSSAVLN FPELSELLPR  120
PVSLMPRDIQ AAAAKAAAMV DINSTPSTST STSSPSSSSL SSSSSSVSLS PSSVSESEEL  180
CEIVELPNIE GTFESAESGN EFILVDSVDS NWVYDPPLIL GGGAEFYGDF PEQLLTVDQS  240
LIPTNYEGLV MWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1950113973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015894578.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894578.10.0ethylene-responsive transcription factor TINY
SwissprotQ9LYD32e-60DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0D2QNZ76e-72A0A0D2QNZ7_GOSRA; Uncharacterized protein
STRINGGorai.003G063500.11e-72(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]