PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015894326.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 604aa MW: 65580.2 Da PI: 9.1653

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015894326.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_015894326.1 70 FICEVCNKGFQREQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	13.1	0.00029	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_015894326.1 146 WKCEKCSKRYAVQSDWKAHSKTC 168 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.29E-7	69	92	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.8E-6	69	92	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	3.0E-5	70	92	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.99	70	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	70	92	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	111	141	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.2E-5	134	167	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.29E-7	141	166	No hit	No description
SMART	SM00355	130	146	166	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence Send to blast
MAASSSSAAV FGIREEDQNQ MKQQHSTTPT SSTPPPAPPQ KKKRNQPGTP NPDAEVIALS 60 PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KTTKEPKRKV YLCPEPTCVH 120 HDPSRALGDL TGIKKHYSRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL 180 FSRRDSFITH RAFCDALAQE SARHPPNLST IGSNLLYANN NTGLGLSQVG PQLSSIQNHN 240 HNNNQSSGGD VLRLGGGRSG QFDHLLSPSS IGSSFRTPQQ PFFLPDQSNH HQFHEEHQSL 300 QHQKSFHGLM QFAELQSNTN TTTTINNSNN NPLSSGSNLF NLPLLSNNIN NNPHSNNSNN 360 ILPSSGLLVS NPFNNEHSTG TAADMVVGSN IYMTGEHITS GVPSLFSTSL QNNNNNNNNS 420 NNSHASSVTH MSATALLQKA AQMGSSTSTN NTASLLRTFG TSSTPSTAKP ESSGSRPIVP 480 GNFCGMFGDN DNNLQDLMNS FAGGSSSIFG SAFGGGFDAN RGNLERMEEG KLHHNVTVSI 540 GGSDRLTRDF LGVGEIVRNM SGGFGQREQQ NRHSQQQSLE MGSLDPEPGA PSSQSFGGAA 600 GNFQ

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence Send to blast

MAASSSSAAV FGIREEDQNQ MKQQHSTTPT SSTPPPAPPQ KKKRNQPGTP NPDAEVIALS  60
PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KTTKEPKRKV YLCPEPTCVH  120
HDPSRALGDL TGIKKHYSRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL  180
FSRRDSFITH RAFCDALAQE SARHPPNLST IGSNLLYANN NTGLGLSQVG PQLSSIQNHN  240
HNNNQSSGGD VLRLGGGRSG QFDHLLSPSS IGSSFRTPQQ PFFLPDQSNH HQFHEEHQSL  300
QHQKSFHGLM QFAELQSNTN TTTTINNSNN NPLSSGSNLF NLPLLSNNIN NNPHSNNSNN  360
ILPSSGLLVS NPFNNEHSTG TAADMVVGSN IYMTGEHITS GVPSLFSTSL QNNNNNNNNS  420
NNSHASSVTH MSATALLQKA AQMGSSTSTN NTASLLRTFG TSSTPSTAKP ESSGSRPIVP  480
GNFCGMFGDN DNNLQDLMNS FAGGSSSIFG SAFGGGFDAN RGNLERMEEG KLHHNVTVSI  540
GGSDRLTRDF LGVGEIVRNM SGGFGQREQQ NRHSQQQSLE MGSLDPEPGA PSSQSFGGAA  600
GNFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	142	203	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-34	142	203	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00255	DAP	Transfer from AT2G02070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015894326.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208494	1e-132	AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015894326.1	0.0	protein indeterminate-domain 5, chloroplastic isoform X1
Swissprot	Q9ZUL3	1e-139	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A2I4GBA6	0.0	A0A2I4GBA6_JUGRE; protein indeterminate-domain 5, chloroplastic
STRING	POPTR_0010s10950.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1536	33	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-117	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]