PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015894322.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 581aa MW: 62212.2 Da PI: 9.8347

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015894322.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_015894322.1 72 FICEVCNKGFQREQNLQLHRRGH 94 89*******************88 PP
2	zf-C2H2	13.1	0.00028	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_015894322.1 148 WKCEKCSKRYAVQSDWKAHSKTC 170 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.65E-7	71	94	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.5E-6	71	94	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.99	72	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	72	94	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	2.8E-5	72	94	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	113	143	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.1E-5	136	169	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.65E-7	143	168	No hit	No description
SMART	SM00355	130	148	168	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence Send to blast
MSAASSSMPF FGTTTREENQ NQMLQQPTST PASSIAPTTA PPKKRRNQPG TPNPDAEVIA 60 LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKTNKEPKR KVYLCPEPTC 120 VHHDPSRALG DLTGIKKHYS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYRCDCG 180 TLFSRRDSFI THRAFCDALA QESARHPTSL NTIGGHIYGN NHMSLGLSQM GSQIPSLQNQ 240 NHPSNNMLRL GNPGGPKLEH LIQPSNPPYG APPPPQHLSS SAFYLPDAAN QPFQDHQSHH 300 HGIPFSNKPL QGLMQLPDLQ TSSNNSSGGA GPAAANLFNL GFFSNNSNAT GSISPDQFND 360 GTNTGQGGTG LFPNNMGDHI GSGMSSLFGN SVQHENIAPH MSATALLQKA AQMGSTTSNE 420 SSNLLRTLRA SSSNRAAAAA AAAKSDRQVM SPNSIQNIGG VENENHLQGL MNSLANGTSA 480 ASMFGGGQGQ DNTFGGFSGG GGGGVAEAKL HQNLAASFGG SDKLTLDFLG VGGIVRNMGG 540 GYSQRDLQHQ QQQHGMTSMT SLDPQLKSTQ GSQPFRGTAL Q

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence Send to blast

MSAASSSMPF FGTTTREENQ NQMLQQPTST PASSIAPTTA PPKKRRNQPG TPNPDAEVIA  60
LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKTNKEPKR KVYLCPEPTC  120
VHHDPSRALG DLTGIKKHYS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYRCDCG  180
TLFSRRDSFI THRAFCDALA QESARHPTSL NTIGGHIYGN NHMSLGLSQM GSQIPSLQNQ  240
NHPSNNMLRL GNPGGPKLEH LIQPSNPPYG APPPPQHLSS SAFYLPDAAN QPFQDHQSHH  300
HGIPFSNKPL QGLMQLPDLQ TSSNNSSGGA GPAAANLFNL GFFSNNSNAT GSISPDQFND  360
GTNTGQGGTG LFPNNMGDHI GSGMSSLFGN SVQHENIAPH MSATALLQKA AQMGSTTSNE  420
SSNLLRTLRA SSSNRAAAAA AAAKSDRQVM SPNSIQNIGG VENENHLQGL MNSLANGTSA  480
ASMFGGGQGQ DNTFGGFSGG GGGGVAEAKL HQNLAASFGG SDKLTLDFLG VGGIVRNMGG  540
GYSQRDLQHQ QQQHGMTSMT SLDPQLKSTQ GSQPFRGTAL Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-35	144	205	3	64	Zinc finger protein JACKDAW
5b3h_F	3e-35	144	205	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015894322.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015894322.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q9ZUL3	1e-136	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A061EG08	0.0	A0A061EG08_THECC; Indeterminate(ID)-domain 5, putative isoform 2
STRING	EOY01198	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1536	33	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-118	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]