PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015894304.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Trihelix

Protein Properties

Length: 334aa MW: 37852.3 Da PI: 9.7107

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015894304.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.3	1.8e-17	64	158	2	86
trihelix 2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 Wt qe+l Li+a++ +eer +++ + + +W++v ++++++g+ rs++qC++kw+nl ++ykk++e e++ +s+ p + + XP_015894304.1 64 WTIQETLILITAKKLDEERRYKARsappdptststtKGELRWKWVENYCWSQGCLRSSNQCNDKWDNLLRDYKKVREYESNA--QSKPDLPSYWN 156 ************77777776544667777777768899**************************************96..45556888888 PP trihelix 85 le 86 +e XP_015894304.1 157 ME 158 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.911	56	132	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.4E-4	57	134	IPR009057	Homeodomain-like
Pfam	PF13837	2.8E-13	63	158	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MSEPTTTSPA ATISPPVNPQ QQQQQQQQPH HHRKSPHFSA ASVGPTTSSS TSTPIEREYR 60 KGNWTIQETL ILITAKKLDE ERRYKARSAP PDPTSTSTTK GELRWKWVEN YCWSQGCLRS 120 SNQCNDKWDN LLRDYKKVRE YESNAQSKPD LPSYWNMEKQ DRKLRNLPSN MALEVFQALN 180 EVLQRKYSTQ TTALRDPQTL SVSPSPAPLA ARPLLPAPTT SAPAPSERSD SSGTEASEKD 240 EETSDTKRKK HGKISSSIKR SASLLAKTLQ NCEEKKEKRH REIMEMERKK LEIEEAHNEV 300 NRQGMVNLVG AVANLSTAIQ SLISYHHHPH HQPT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015894304.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015894304.1	0.0	trihelix transcription factor ASR3-like
TrEMBL	A0A2N9EPS2	1e-109	A0A2N9EPS2_FAGSY; Uncharacterized protein
STRING	XP_002521872.1	1e-107	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6804	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	8e-43	Trihelix family protein