PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015893952.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 247aa    MW: 28772.8 Da    PI: 9.946
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015893952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM111.41e-34151441128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk.atgkdkevl 93 
                     lp G+rFhPtdeel+ +yLkkkv + +l++ +vi+e+d+++++P dLp  +   +++ yfF +++++ + ++  +r +  sgyWk   gk+k+++
  XP_015893952.1  15 LPIGYRFHPTDEELLLHYLKKKVLNIPLPA-SVIPEFDVFQAHPYDLPGDL---REKRYFFYNQKRNVN-DEMCKRvSGCSGYWKpVIGKEKQIV 104
                     699***************************.99***************554...346678877777664.5566663667*****668******* PP

             NAM  94 sk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++     ++++ g++ktL f + ++p+g++t+Wvmhey+l
  XP_015893952.1 105 ASdnndqRNRAFGVRKTLLFRERKRPRGRQTRWVMHEYHL 144
                     99776666666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-4110172IPR003441NAC domain
PROSITE profilePS5100539.25715173IPR003441NAC domain
PfamPF023656.5E-2116144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEKSSNFVIN GGLKLPIGYR FHPTDEELLL HYLKKKVLNI PLPASVIPEF DVFQAHPYDL  60
PGDLREKRYF FYNQKRNVND EMCKRVSGCS GYWKPVIGKE KQIVASDNND QRNRAFGVRK  120
TLLFRERKRP RGRQTRWVMH EYHLLGLGIN PNSFSQKFEM EVGEWVIFRI FQRRRRPRNY  180
GIVSQPPNTK RTKITDMIRP SYLDYTVENV SVSGPPSPCL SFSSGVTEIS FDGVVDDQEE  240
NSNPNLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-241317413169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015893952.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893951.10.0NAC domain-containing protein 83 isoform X1
RefseqXP_015893952.10.0NAC domain-containing protein 83 isoform X2
TrEMBLA0A0M4G3S66e-80A0A0M4G3S6_MANES; NAC transcription factors 86
STRINGcassava4.1_031758m1e-80(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.19e-43NAC domain containing protein 84