PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015893680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NAC | ||||||||
Protein Properties | Length: 328aa MW: 37255.9 Da PI: 4.7467 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 82.7 | 7.5e-26 | 13 | 150 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiy.kvePwdLpkkvka....eek....ewyfFskrdkkyatgkrknratksgyWkatg 87 +G rF+Ptdeelv +yL +k++g++ l+ ++++++d++ k ePw++ +++++ + + ++yfF+k +k++++gkr nr++ sg+Wk + XP_015893680.1 13 KGWRFRPTDEELVGYYLLNKITGSTpLPNPNIVRDFDVFgKQEPWEIWNSFRNgtddD-DpdpdDLYFFTKPKKTTPKGKRFNRKVGSGTWKGQD 106 79********************99977777889***987367*****75333322321.1345588***************************** PP NAM 88 kdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +e++++ + ++glkk + + +++ k + +W+m ey l XP_015893680.1 107 SGTEIYANietgEAIVMGLKKRFHYE-NKQYKEHDGSWIMFEYCL 150 ******98876566669*****9986.6777779*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-31 | 8 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.399 | 11 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-18 | 13 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MEFPATAHVR PLKGWRFRPT DEELVGYYLL NKITGSTPLP NPNIVRDFDV FGKQEPWEIW 60 NSFRNGTDDD DPDPDDLYFF TKPKKTTPKG KRFNRKVGSG TWKGQDSGTE IYANIETGEA 120 IVMGLKKRFH YENKQYKEHD GSWIMFEYCL AGSLENRITS PDNDFVLCQI RKKNENSKKK 180 RKKLMIMNRG DDNDYVMPPL KNQKTNNNGG VDADNGTMLF AVPPLQALPI CQEEPPFPIL 240 PQDLTLAVED GHGDHGHNTN VQVDPLPLPL PCPQQQQQQQ PQPQPQPPLP QSSLPLPAVD 300 DDSHMPLPPD GDFDDFIIDF GVLDDFNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-13 | 14 | 179 | 20 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-13 | 14 | 179 | 20 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-13 | 14 | 179 | 20 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-13 | 14 | 179 | 20 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-13 | 14 | 179 | 23 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-13 | 14 | 179 | 23 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-13 | 14 | 179 | 23 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-13 | 14 | 179 | 23 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-13 | 14 | 179 | 23 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-13 | 14 | 179 | 23 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-13 | 14 | 179 | 23 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-13 | 14 | 179 | 23 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-13 | 14 | 179 | 20 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-13 | 14 | 179 | 20 | 171 | NAC domain-containing protein 19 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 178 | 182 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015893680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015893680.1 | 0.0 | NAC domain-containing protein 83-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62380.1 | 9e-16 | NAC-domain protein 101 |