PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015893626.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NAC | ||||||||
Protein Properties | Length: 215aa MW: 24506.8 Da PI: 9.9113 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.6 | 6.9e-42 | 9 | 128 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL k+ +e ++wyfFs++ + ++r+t++gyWka g +++vls+ XP_015893626.1 9 LPPGFRFYPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYPYDPWDLTGKALEEGNQWYFFSRKTQ-------NERVTNNGYWKAMGIEEAVLSS 95 79*************************999.99**************977777899*****99754.......689******************* PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+ vg+kk Lvfy g++p+g kt+W+mhey+l XP_015893626.1 96 SGRRVGTKKYLVFYLGESPSGIKTNWIMHEYHL 128 ********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-49 | 6 | 134 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.829 | 9 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-25 | 10 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MGDHNNVNLP PGFRFYPTDE ELVVHFLHRK ASLLPCHPDV IPDLDLYPYD PWDLTGKALE 60 EGNQWYFFSR KTQNERVTNN GYWKAMGIEE AVLSSSGRRV GTKKYLVFYL GESPSGIKTN 120 WIMHEYHLSD SASSSSSRSS SKGRSTKKIV KLWRKGINGT SSAEKLRTKG LRIMGTGKQW 180 ELRKLFSQAP VEELEQRNTW CSTWGNLLPA LKPIG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 9e-41 | 5 | 137 | 16 | 154 | NAC domain-containing protein 19 |
3swm_B | 9e-41 | 5 | 137 | 16 | 154 | NAC domain-containing protein 19 |
3swm_C | 9e-41 | 5 | 137 | 16 | 154 | NAC domain-containing protein 19 |
3swm_D | 9e-41 | 5 | 137 | 16 | 154 | NAC domain-containing protein 19 |
3swp_A | 9e-41 | 5 | 137 | 16 | 154 | NAC domain-containing protein 19 |
3swp_B | 9e-41 | 5 | 137 | 16 | 154 | NAC domain-containing protein 19 |
3swp_C | 9e-41 | 5 | 137 | 16 | 154 | NAC domain-containing protein 19 |
3swp_D | 9e-41 | 5 | 137 | 16 | 154 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015893626.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024933511.1 | 1e-109 | NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 3e-61 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | W9RXQ8 | 6e-72 | W9RXQ8_9ROSA; NAC domain-containing protein 68 | ||||
STRING | XP_010103879.1 | 1e-72 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-50 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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