PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015892873.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 270aa    MW: 29786.6 Da    PI: 10.0311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015892873.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79e-21144192355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+ +++g
  XP_015892873.1 144 FRGVRQRP-WGKWAAEIRDPR----RqARVWLGTFNTAEEAARAYDKAAIEFRG 192
                     8*******.**********83....46************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.65E-34142200No hitNo description
Gene3DG3DSA:3.30.730.109.2E-33143200IPR001471AP2/ERF domain
PROSITE profilePS5103225.132143200IPR001471AP2/ERF domain
SMARTSM003801.5E-38143206IPR001471AP2/ERF domain
PfamPF008478.4E-15144192IPR001471AP2/ERF domain
PRINTSPR003671.2E-11144155IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23144201IPR016177DNA-binding domain
PRINTSPR003671.2E-11166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MHRSSKRPKL DGAPPTHPVS PSQLPRRLSH EQEISIIVSA LRDVVSGNDS QEFQSPLLQA  60
NYTTAAASSS SSNPNSSSGT NQWGGCGGAL LPPSSDLDTC NVCRINGCLG CNFFPPSNTS  120
DTNTTNNAPR VEKKVPRKRT KKNFRGVRQR PWGKWAAEIR DPRRQARVWL GTFNTAEEAA  180
RAYDKAAIEF RGPRAKLNFP FPESTLSGQQ DEEEEVVPRV AIPNSFMARC LVILFLPPEM  240
KILYRVEVVV RVVSSRTAST HDVGKNMALE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-23142201161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015892873.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892873.10.0ethylene-responsive transcription factor ERF109
TrEMBLA0A1L6CB102e-70A0A1L6CB10_9ROSI; AP2/ERF domain-containing transcription factor
TrEMBLA0A1L6CB792e-70A0A1L6CB79_VERFO; AP2/ERF domain-containing transcription factor
STRINGPOPTR_0009s10470.13e-69(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.13e-32redox responsive transcription factor 1