PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015892615.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 261aa MW: 27509.3 Da PI: 7.6101 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00064 | 104 | 126 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F + L H +H XP_015892615.1 104 YKCSVCNKAFASYQALGGHKASH 126 9***********99998888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.011 | 104 | 126 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 6.2E-13 | 104 | 128 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.3E-10 | 104 | 126 | No hit | No description |
PROSITE profile | PS50157 | 10.554 | 104 | 131 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 106 | 126 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.3E-10 | 167 | 194 | No hit | No description |
Pfam | PF13912 | 1.6E-13 | 171 | 196 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 172 | 194 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.328 | 172 | 194 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 174 | 194 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MALEALKSPS TAPPFSFEDM ENNNHSRFHE PWMKRKRSRR PRFDDDDVDN HNTPSEEEYL 60 ALCLIMLARG HGGPPPKQDN RDAPAPASVA SQLPPQPPAL KLSYKCSVCN KAFASYQALG 120 GHKASHRKSS ASSTSDAAAA AADNNPSTST TTASTTTAAA AGGAAPTSGR THECSICHKT 180 FPTGQALGGH KRCHYDGASG NSGASGNSSL TLSEGGASSQ SLSQSHRGFD LNLPAFPEFL 240 DVGRRIQLPG DQEAESPLPL K |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015892615.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015892615.1 | 0.0 | zinc finger protein ZAT10, partial | ||||
TrEMBL | A0A2P5DNE4 | 2e-89 | A0A2P5DNE4_PARAD; Zinc finger transcription factor | ||||
STRING | XP_008236445.1 | 4e-80 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1327 | 32 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 7e-53 | salt tolerance zinc finger |